Locus 1672

Sequence ID 3L_DroMel_CAF1
Location 4,858,605 – 4,858,716
Length 111
Max. P 0.512709
window2583

overview

Window 3

Location 4,858,605 – 4,858,716
Length 111
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 91.81
Mean single sequence MFE -39.80
Consensus MFE -32.16
Energy contribution -32.73
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -1.47
Structure conservation index 0.81
SVM decision value -0.04
SVM RNA-class probability 0.512709
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4858605 111 - 23771897
AGCUGUUGCUGCUGACCGGCCAUG-GGCAUCCACUUGACCACCUUUAAAGGUGCC---UGCAUGGCAAGUAGCUUCUGUUGGUCCUGCCCCAAGGACCUCCC-CCUUUUCCCUCGA
(((....((((((.....((((((-((((((...((((......)))).))))))---..)))))).))))))....)))((((((......))))))....-............. ( -37.00)
>DroSec_CAF1 86402 112 - 1
AGCUGUUGCUGCUGACCGUGCAUGGGGCAUCCACUUGACCACCUUUAAAGGUGCC---UGCAUGGCAAGUGGCUUCUGUUGGUCCUGCCGCAAGGACCUCGC-CCGUUUCCCUCGA
.((....((..((..(((((((.((((((......)).))((((....)))).))---)))))))..))..)).......((((((......))))))..))-............. ( -39.50)
>DroSim_CAF1 90685 112 - 1
AGCUGUUGCUGCUGACCGGGCAUGGGGCAUCCACUUGACCACCUUUAAAGGUGCC---UGCAUGGCAAGUGGCUUCUAUUGGUCCUGCCGCAAGGACCUCCC-CCGUUUCCCUCGA
(((....))).......(((.((((((...(((((((..(((((....)))))((---.....)))))))))........((((((......))))))..))-))))..))).... ( -41.80)
>DroYak_CAF1 87772 116 - 1
AGCUGUUGCUGCUGACCGGGCAUGGGGCAUCCACUUGACCACCUUUAAAGGCGCCUCCUGCAUGGCAAGUGGCUUCUGUUGGUCCUGCCGCAAGGACCUCCCCCUCAUACCCCCAA
(((....))).......(((.((((((...(((((((.((((((....))).((.....)).))))))))))........((((((......))))))....)))))).))).... ( -40.90)
>consensus
AGCUGUUGCUGCUGACCGGGCAUGGGGCAUCCACUUGACCACCUUUAAAGGUGCC___UGCAUGGCAAGUGGCUUCUGUUGGUCCUGCCGCAAGGACCUCCC_CCGUUUCCCUCGA
(((....((((((..(((.(((...((((((...((((......)))).))))))...))).)))..))))))....)))((((((......)))))).................. (-32.16 = -32.73 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:21 2006