Locus 1671

Sequence ID 3L_DroMel_CAF1
Location 4,858,017 – 4,858,115
Length 98
Max. P 0.690966
window2582

overview

Window 2

Location 4,858,017 – 4,858,115
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 83.32
Mean single sequence MFE -28.45
Consensus MFE -18.62
Energy contribution -19.14
Covariance contribution 0.52
Combinations/Pair 1.17
Mean z-score -1.93
Structure conservation index 0.65
SVM decision value 0.33
SVM RNA-class probability 0.690966
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4858017 98 + 23771897
GAACAAAAGGCGCAUCCAAUGAAUGGCAAAAAGUUAUUGCCGCAGCAGGCAGGAUGACUGCACUUCUGGGUAAGAUACUUUCGUGGGAUGAAUUCCUA
.......(((..(((((.(((((........(((..(((((.(((.((((((.....)))).)).))))))))...)))))))).)))))....))). ( -30.90)
>DroSec_CAF1 85800 98 + 1
GAACAAAAGGCGCAUCCAAUGGAUGGCAAAAAGUUAUCGCAGCAGCAGGCAGGAUGACUGCACUUCUGGGUAAGAUACUUUCGUGGGAUGGGUUCCUA
.......((((.(((((.(((((((((.....))))))((..(((.((((((.....)))).)).))).))..........))).))))).)..))). ( -28.60)
>DroSim_CAF1 90083 98 + 1
GAACAAAAGGCGCAUCCAAUGGAUGGCAAAAAGUUAUCGCCGCAGCAGGCAGGAUGACUGCACUUCUGGGUAAGAUACUUUCGUGGGAUGGGUUCCUA
.......((((.(((((.(((((((((.....))))))(((.(((.((((((.....)))).)).))))))..........))).))))).)..))). ( -32.20)
>DroEre_CAF1 87209 83 + 1
GAACAAAAGGCGCAUCCAAUGGAUGGCAAAAAGUUAUCGCAGCAGC---------------ACUUUUGGGUAAGAUACUUUCAUGGGAUGGGCUCCCA
........(((.(((((.(((((((((.....))))))((....))---------------....................))).))))).))).... ( -21.30)
>DroYak_CAF1 87202 88 + 1
GAACAAAAGGCGCAUCCCAUGGAUGGCAAAAAGUUAUCGCAGCAGCCAUCCG---------ACUUCUGAGUUAGAUACU-UCAAGGGAUGGGUUUUUC
.....((((((.((((((..(((((((.................)))))))(---------(((....)))).......-....)))))).)))))). ( -29.23)
>consensus
GAACAAAAGGCGCAUCCAAUGGAUGGCAAAAAGUUAUCGCAGCAGCAGGCAGGAUGACUGCACUUCUGGGUAAGAUACUUUCGUGGGAUGGGUUCCUA
........(((.(((((.(((((((((.....))))))....(((...((((.....))))....))).............))).))))).))).... (-18.62 = -19.14 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:20 2006