Locus 1670

Sequence ID 3L_DroMel_CAF1
Location 4,854,493 – 4,854,588
Length 95
Max. P 0.585584
window2581

overview

Window 1

Location 4,854,493 – 4,854,588
Length 95
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 88.01
Mean single sequence MFE -26.50
Consensus MFE -19.29
Energy contribution -19.10
Covariance contribution -0.19
Combinations/Pair 1.14
Mean z-score -3.15
Structure conservation index 0.73
SVM decision value 0.10
SVM RNA-class probability 0.585584
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4854493 95 - 23771897
AAGAUGGCAAGGAA-------AAGCAUAAAGUGUCUGAGAAACUGCAGCGAAGCGAAAGCAAAUAAAGAGCGAAAUAUGGUUUUCAAUUUCGCUGCUUGCCA
....(((((((((.-------..((.....)).)))........((((((((((....))...........((((......))))...)))))))))))))) ( -29.50)
>DroSec_CAF1 82298 95 - 1
AAGAUGGCAAGGUA-------AAGCAUAAAGUGUCUGAGAAACUGCAGCGAGGCGAAAGCAAAUAAAGAGCGAAAUAUGGUUUUCAAUUUCGCUGCUUGCCA
....((((((....-------........(((.........)))((((((((((....))...........((((......))))...)))))))))))))) ( -27.30)
>DroSim_CAF1 86585 95 - 1
AAGAUGGCAAGGUA-------AAGCAUAAAGUGUCUGAGAAACUGCAGCGAGGCGAAAGCAAAUAAAGAGCGAAAUAUGGUUUUCAAUUUCGCUGCUUGCCA
....((((((....-------........(((.........)))((((((((((....))...........((((......))))...)))))))))))))) ( -27.30)
>DroEre_CAF1 83822 102 - 1
AAAAUGGCAAGGAGCAUAAAGGAGCAUAAAGUGUCUGAGAAACUGCAGCAAAGCGAAAGCAAAUAAAGAGCGAAAUAUGGUUUUCAAUUUCGCUGCUUGGCA
....((.((((.(((........((......((.(((........)))))..((....)).........))(((((.((.....)))))))))).)))).)) ( -24.70)
>DroYak_CAF1 83677 95 - 1
GAAAUGGCAAGGAA-------AAGCAUAAAGUGUCUGAGAAACUGCAGCGAAGCGAAAGCAAAUAAAGAGCGAAAUAUGGUUUUCAAUUUCGCUGCUUGGCA
....((.((((((.-------..((.....)).)))........((((((((((....))...........((((......))))...))))))))))).)) ( -24.90)
>DroAna_CAF1 87160 95 - 1
AGUGCAGCACAGAG-------CACCAUAAAGUGUCUAAGAAAUGGCAGCGAAGCGAAGGCAAAUAAAGAGCGAAAUAUGAUUUUCAAUUUCGCUGUUGGACU
.((((........)-------)))........(((((.......((((((((((....))...........((((......))))...))))))))))))). ( -25.31)
>consensus
AAGAUGGCAAGGAA_______AAGCAUAAAGUGUCUGAGAAACUGCAGCGAAGCGAAAGCAAAUAAAGAGCGAAAUAUGGUUUUCAAUUUCGCUGCUUGCCA
............................................((((((((((....))...........((((......))))...))))))))...... (-19.29 = -19.10 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:19 2006