Locus 167

Sequence ID 3L_DroMel_CAF1
Location 517,167 – 517,257
Length 90
Max. P 0.618857
window235

overview

Window 5

Location 517,167 – 517,257
Length 90
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 79.96
Mean single sequence MFE -31.55
Consensus MFE -18.79
Energy contribution -19.72
Covariance contribution 0.94
Combinations/Pair 1.09
Mean z-score -1.89
Structure conservation index 0.60
SVM decision value 0.17
SVM RNA-class probability 0.618857
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 517167 90 + 23771897
CAGUACGCAGUACACACUACAGCGACUGCUCAUGUGUGUGGCAGU--------GUGGGUGUGUGGGCGCGGCCAUUCCAAUCCACACACACUCCUGCA
......(((((((((((...(((....)))...)))))))...((--------((((((..((((......))))....))))))))......)))). ( -34.10)
>DroSec_CAF1 96960 98 + 1
CAGUACGCAGUACCCACUACCGUGACUGCUCAUGUGUGUGGCUGUGUUGGUGUGUGGGUGUGUGGGCGUGGCCAUUCCAAUCUACACACACUCCUGCA
......((((...(((((((((..((.((.(((....))))).))..))))).))))(((((((((..(((.....))).)))))))))....)))). ( -36.90)
>DroSim_CAF1 100895 90 + 1
CAGUACGCAGUACCCACUACCGUGACUGCUCAUGUGUGUGGCUGU--------GUGGGUGUGUGGGCGCGGCCAUUCCAAUCCACACACACUCCUGCA
(((.((((((...((((.(((((((....))))).))))))))))--------))(((((((((((...((.....))...)).)))))))))))).. ( -34.20)
>DroEre_CAF1 100769 74 + 1
CAGUACCCAGUAACCAGCACUGCGACUGCUCAUG------------------------UGUGUGGGCGCGGCCAUUCCAAUCCACACACACUCCUUAC
((((.(.((((.......)))).)))))....((------------------------((((((((...((.....))..))))))))))........ ( -21.00)
>consensus
CAGUACGCAGUACCCACUACCGCGACUGCUCAUGUGUGUGGCUGU________GUGGGUGUGUGGGCGCGGCCAUUCCAAUCCACACACACUCCUGCA
((((.(((.(((.....))).)))))))...........................(((((((((((...((.....))...)).)))))))))..... (-18.79 = -19.72 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:13 2006