| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,849,584 – 4,849,678 |
| Length | 94 |
| Max. P | 0.616962 |
| Location | 4,849,584 – 4,849,678 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 81.22 |
| Mean single sequence MFE | -15.47 |
| Consensus MFE | -14.25 |
| Energy contribution | -14.17 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.616962 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4849584 94 + 23771897 AUCAGCUAAAUGAAGUGCGAGUGCUCUUUCACUUAACUUUUAUGCUGACUGCCCCCC--AAUGCCACUUAAUAGAUAACUUUGCUCUAUAC---------AUA--CA .(((((.....(((((..(((((......))))).)))))...))))).........--...........(((((.........)))))..---------...--.. ( -16.20) >DroPse_CAF1 116304 86 + 1 AUCAGCUAAAUGAAGUGCAAGUGCUCUUUCACUUAACUUUUAUGCUGACUCCUCCACUGACUGCCACUUAAUAGAUAACUUUUCC---------------------A .(((((.....(((((..(((((......))))).)))))...))))).....................................---------------------. ( -14.50) >DroEre_CAF1 78070 86 + 1 AUCAGCUAAAUGAAGUGCGAGUGCUCUUUCACUUAACUUUUAUGCUGACUGCCCCCC--AAUGCCACUUAAUAGAUAACUUUGCUCUA------------------- .(((((.....(((((..(((((......))))).)))))...))))).........--.............................------------------- ( -14.90) >DroYak_CAF1 78842 103 + 1 AUCAGCUAAAUGAAGUGCGAGUGCUCUUUCACUUAACUUUUAUGCUGACUGCCUCCC--AAUGCCACUUAAUAGAUAACUUUGCUCUAUGCGAGUACGAUGUA--CA .(((((.....(((((..(((((......))))).)))))...))))).........--.....................((((.....))))((((...)))--). ( -19.80) >DroAna_CAF1 82172 93 + 1 --CAGCUAAAUGAAGUGCAAGUGCUCUUUCACUUAACUUUUAUGCUGACUGCCCCCC--AAUGCCACUUAAUAGAUAGCCACA-UAUACAC---------AUUCCCA --((((.....(((((..(((((......))))).)))))...))))..........--........................-.......---------....... ( -12.90) >DroPer_CAF1 121978 86 + 1 AUCAGCUAAAUGAAGUGCAAGUGCUCUUUCACUUAACUUUUAUGCUGACUCCUCCACUGACUGCCACUUAAUAGAUAACUUUUCC---------------------A .(((((.....(((((..(((((......))))).)))))...))))).....................................---------------------. ( -14.50) >consensus AUCAGCUAAAUGAAGUGCAAGUGCUCUUUCACUUAACUUUUAUGCUGACUGCCCCCC__AAUGCCACUUAAUAGAUAACUUUGCUCUA__________________A .(((((.....(((((..(((((......))))).)))))...)))))........................................................... (-14.25 = -14.17 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:18 2006