Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,846,347 – 4,846,437 |
Length | 90 |
Max. P | 0.500000 |
Location | 4,846,347 – 4,846,437 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 85.03 |
Mean single sequence MFE | -22.05 |
Consensus MFE | -16.38 |
Energy contribution | -17.27 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.11 |
Mean z-score | -1.89 |
Structure conservation index | 0.74 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4846347 90 - 23771897 CUCCCAACUCGUACCAUCCAAUUCUGGGAGCAUGUUUAAUAUGCUCGCACUGCCGGCAAACUUUUUCGACGGCAAAACUUCUGUCGAAUU- .............((..(((....)))((((((((...))))))))........))........((((((((........))))))))..- ( -21.30) >DroSec_CAF1 74336 86 - 1 ----CAUCUCGUACCAUCCGAUUCUGGGAGCAUGUUUAAUAUGCUCGCACUGCCGGCAAACUUUUUCGACAGUAAAACUUCAGUCGAAUU- ----.............(((.(..((.((((((((...)))))))).))..).)))........((((((............))))))..- ( -20.00) >DroSim_CAF1 78486 90 - 1 CUCCCAUCUCGUACCAUCCAAUUCUGGGAGCAUGUUUAAUAUGCUCGCACUGCCGGCCAACUUUUUCGACGGUAAAACUUCUGUCGAAUU- .............((..(((....)))((((((((...))))))))........))........((((((((........))))))))..- ( -22.30) >DroEre_CAF1 74845 86 - 1 ----AAUCUCGUCCCAUACAAUUCUGGGAGCAUGUUUAAUAUGCUCGCACUGCCGGCAAACUUUUUCGACGGCGAAACUUCUACCAAAUU- ----....................(((((((((((...))))))))....(((((..............))))).........)))....- ( -18.44) >DroYak_CAF1 75599 86 - 1 ----AAUCUCGUAGCAUCCAAUUCUGGGAGCAUGUUUAAUAUGCUCGCACUGCCGGCAAACUUUUUCGACGGCAAAACUUCUACCGAAUU- ----....(((..((..(((....)))((((((((...))))))))))..(((((..............)))))..........)))...- ( -22.04) >DroAna_CAF1 78938 81 - 1 CGCCCGCCUCGUCGC--------CUGGGAGCAUGUUUAAUAUGCUCGCACUGCCGGCAAACUUUUUCGGCG--AAAACUUCCGCCGAAGUC .(((.((...((.((--------....((((((((...)))))))))))).)).)))......((((((((--........)))))))).. ( -28.20) >consensus ____CAUCUCGUACCAUCCAAUUCUGGGAGCAUGUUUAAUAUGCUCGCACUGCCGGCAAACUUUUUCGACGGCAAAACUUCUGCCGAAUU_ ........................((.((((((((...)))))))).))...............((((((((........))))))))... (-16.38 = -17.27 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:17 2006