Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,817,517 – 4,817,619 |
Length | 102 |
Max. P | 0.826167 |
Location | 4,817,517 – 4,817,619 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 79.27 |
Mean single sequence MFE | -24.22 |
Consensus MFE | -19.41 |
Energy contribution | -19.47 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.11 |
Mean z-score | -1.44 |
Structure conservation index | 0.80 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826167 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4817517 102 - 23771897 CUCUGACCCACA------CCCUCCCCCACCACC-CCUUCGUCUGACCCAUUCGGCCUGUGGUCAGGGACAAUUGCAGCAGAGCGCUGUAAUUAUUAAAAAGUAAAUAAC ((((((((.(((------............((.-.....))((((.....))))..)))))))))))..(((((((((.....)))))))))................. ( -23.90) >DroSec_CAF1 45114 92 - 1 CGCUGACCCACA----------------CCACC-CCUUCGCCUGACCCGUUCGGCCUGUGGUCAGGGACAAUUGCAGCAGAGCGCUGUAAUUAUUAAAAAGUAAAUAAC .(((..(((..(----------------((((.-.....(((.((....)).)))..)))))..)))..(((((((((.....))))))))).......)))....... ( -25.30) >DroSim_CAF1 47403 92 - 1 CGCUGACCCACA----------------CCACC-CCUUCGUCUGACCCAUUCGGCCUGUGGUCAGGGACAAUUGCAGCAGAGCGCUGUAAUUAUUAAAAAGUAAAUAAC .(((..(((..(----------------((((.-...(((..((...))..)))...)))))..)))..(((((((((.....))))))))).......)))....... ( -22.90) >DroEre_CAF1 46281 88 - 1 --------------------CUCCCCCGCCACC-CCGUCGUCUGACCCAUUGGGCCUGUGGUCAGGGACAAUUGCUGCAGAGCGCUGUAAUUAUUAAAAAGUAAAUAAC --------------------.((((..((((((-(((((....))).....)))...)))))..)))).((((((.((.....)).))))))................. ( -22.60) >DroYak_CAF1 45279 108 - 1 CCCUGUCCCCUUCCCCUUCCCUCCACCGACACC-CCUGCGUCUGACCCAUUCGGCCUGUGGUCAGGGACAAUUGCAGCAGAGCGCUGUAAUUAUUAAAAAGUAAAUAAC ....(((((..................(((...-.....)))(((((((.......)).))))))))))(((((((((.....)))))))))................. ( -28.10) >DroAna_CAF1 49841 91 - 1 ------------------CGCUCCUCCAUCGCCUUCUCCGUCUGACCCAUUCAGCUUGUGGUCAGGGACAAUUGCAGUGGAGCUCUGUAAUUAUUAAAAAGUAAAUAAC ------------------.....((((((.((....(((..((((((((.......)).))))))))).....)).))))))........................... ( -22.50) >consensus C_CUGACCCACA________CUCC_CC_CCACC_CCUUCGUCUGACCCAUUCGGCCUGUGGUCAGGGACAAUUGCAGCAGAGCGCUGUAAUUAUUAAAAAGUAAAUAAC ........................................(((((((((.......)).)))))))...(((((((((.....)))))))))................. (-19.41 = -19.47 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:11 2006