| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,815,490 – 4,815,585 |
| Length | 95 |
| Max. P | 0.944877 |
| Location | 4,815,490 – 4,815,585 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 93.79 |
| Mean single sequence MFE | -28.63 |
| Consensus MFE | -27.63 |
| Energy contribution | -27.97 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.97 |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.944877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4815490 95 - 23771897 AAA--AGUGUGGCCCAGACCACGAAAGGAAAUUUCCUGGGCUGUGCGAAAAUCUUUUGGGCCAGAGCUUUAAACGAGUUUUCUGAAA-AAGGAUAAGC ...--.(((..((((((....(....)((....))))))))..)))....(((((((....((((((((.....))))..))))..)-)))))).... ( -26.60) >DroSec_CAF1 43141 95 - 1 AAG--AGUGUGGCCCAGACCACGAAAGGAAAUUUCCUGGGCUGUGCGAAAAUCUUUGUGGCCAGAGCUUUAAACGAGUUUUCUGGAAAAAGGAUCAG- ...--.(((..((((((....(....)((....))))))))..)))....((((((....(((((((((.....))))..)))))...))))))...- ( -29.80) >DroSim_CAF1 45395 96 - 1 AAGAGAGUGUGGCCCAGACCACGAAAGGAAAUUUCCUGGGCUGUGCGAAAAUCUUUGUGGCCAGAGCUUUAAACGAGUUUUCUGGAA-AAGGAUCAG- ......(((..((((((....(....)((....))))))))..)))....((((((....(((((((((.....))))..)))))..-))))))...- ( -29.50) >consensus AAG__AGUGUGGCCCAGACCACGAAAGGAAAUUUCCUGGGCUGUGCGAAAAUCUUUGUGGCCAGAGCUUUAAACGAGUUUUCUGGAA_AAGGAUCAG_ ......(((..((((((....(....)((....))))))))..)))....((((((....(((((((((.....))))..)))))...)))))).... (-27.63 = -27.97 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:10 2006