| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,812,167 – 4,812,287 |
| Length | 120 |
| Max. P | 0.521187 |
| Location | 4,812,167 – 4,812,287 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.72 |
| Mean single sequence MFE | -34.90 |
| Consensus MFE | -21.06 |
| Energy contribution | -20.37 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521187 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4812167 120 - 23771897 UUGGAUCUGCAUGGUAAUAAACUCACCAGUCUGGGCAGUCGCAUCAACUGCCUGCAGCAACUGAAAUCAUUGAAUCUGGCGGGAAAUCAAAUUCGUCAGAUAAAUCAGCAGGAUUUUCUU .....(((((.((((...........(((((((((((((.......))))))..)))..))))..........((((((((((........))))))))))..)))))))))........ ( -33.00) >DroVir_CAF1 53986 120 - 1 CUGGAUUUGCACGGCAAUAAGCUGACCAGCCUGGGCAGCCGGAUCAGCUGUCUGCAUCAGCUGAAAUCCCUCAAUCUGGCCGGCAAUCAGAUCCGGCAGAUCAAUCAGCAGGAUUUCCAC .((((.((((.((((.....((((.((.....)).)))).((((((((((.......)))))))..))).........))))))))...(((((.((.((....)).)).))))))))). ( -43.50) >DroGri_CAF1 64492 120 - 1 CUCGAUCUGCAUGGCAACAAGCUGACCAGUCUGGGCAGUCGCAUUAACUGCCUGCAGCAGCUGAAAUCCCUCAAUCUAGCUGGGAAUCAAAUACGCCAGAUUAAUCAGCAGGAUUUUCAC ...(((((...((....)).(((((..(((((((((((..(((.....)))))))..((((((.............)))))).............)))))))..))))).)))))..... ( -35.52) >DroWil_CAF1 41168 120 - 1 UUAGAUUUGCAUGGCAACAAACUGACCAGUUUGGGUAAUCGAAUCAAUUGCCUGCAGCAGCUAAAAUCUCUGAAUCUGGCCGGGAAUCAGAUACGGCAGAUCAAUCAGCAGGAUUUCAAU .(((..(((((.(((((((((((....))))))(((......)))..))))))))))...)))(((((((((((((((.(((...........))))))))...))))..)))))).... ( -34.40) >DroMoj_CAF1 73480 120 - 1 CUUGAUCUGCACGGCAAUAAGCUAACCACCCUGGGCAGCAGAAUCAACUGCCUCCAUCUGCUGAAGUCCCUCAAUCUGGCUGGCAAUCAAAUCAGGCAAAUCAAUCAGCAGGAUUUCCAG .(((((((((..(((.....)))..((.....))...)))).)))))(((......((((((((.(.....)....((.((((........)))).))......)))))))).....))) ( -28.50) >DroAna_CAF1 44322 120 - 1 CUGGAUCUGCAUGGAAACAAGCUCACAAGCCUGGGAAGUAAGAUAAACUGCCUGCAGCAGCUGAAGUCGCUGAAUCUGGCCGGGAACCAAAUACGGCAGAUCAACCAGCAGGAUUUCCUG ((((((((((.((....))...((.(..(((.(((.(((.......))).))).((((.((....)).)))).....)))..)))..........))))))...))))((((....)))) ( -34.50) >consensus CUGGAUCUGCAUGGCAACAAGCUGACCAGCCUGGGCAGUCGAAUCAACUGCCUGCAGCAGCUGAAAUCCCUCAAUCUGGCCGGGAAUCAAAUACGGCAGAUCAAUCAGCAGGAUUUCCAC .....(((((.((((.....(((....)))..(((((((.......)))))))......))))..........((((.((((...........))))))))......)))))........ (-21.06 = -20.37 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:09 2006