Locus 166

Sequence ID 3L_DroMel_CAF1
Location 515,525 – 515,615
Length 90
Max. P 0.522363
window234

overview

Window 4

Location 515,525 – 515,615
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 86.82
Mean single sequence MFE -16.95
Consensus MFE -10.61
Energy contribution -10.61
Covariance contribution 0.00
Combinations/Pair 1.25
Mean z-score -1.89
Structure conservation index 0.63
SVM decision value -0.02
SVM RNA-class probability 0.522363
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 515525 90 - 23771897
AUUCAAACUGCUGGUGCUUUACAUACUCAUUUGGUUUGGAGUUGCUGAUUUGUUACUUUAAAAUUAUAUGUAUUAGUACUAUUUUAUUAA
...........(((((((.(((((((......).((((((((.((......)).))))))))....))))))..)))))))......... ( -17.30)
>DroSec_CAF1 95354 87 - 1
AUUCAAAC---UGGUGCUUAACAUACUCUUUUGGUUUCGAGUUGCUGAUUUGUGACUUUAAAAUUAUAUGUGUUAGUACUAUUUUAUUAA
....(((.---(((((((.((((((......((((((.((((..(......)..))))..))))))..))))))))))))).)))..... ( -18.40)
>DroSim_CAF1 97762 87 - 1
AUUCAAGC---UGGUGCUUAACAUACUCUUUUGGUUUCGAGUUGCUGAUUUGUGACUUUAAAAUUAUAUGUGUUAGUACUAUUUUAUUAA
....(((.---(((((((.((((((......((((((.((((..(......)..))))..))))))..))))))))))))).)))..... ( -18.10)
>DroYak_CAF1 101283 86 - 1
AUUCAAAC---UGGUGUUUAACAUACUCUUUU-GUUUCCAGUUAUUGAUUUGUGUCUUUAAAAUUUGAUAUACAAGUACUGUAGUAUUAA
..((((((---(((.....((((........)-))).)))))..))))..((((((..........))))))..(((((....))))).. ( -14.00)
>consensus
AUUCAAAC___UGGUGCUUAACAUACUCUUUUGGUUUCGAGUUGCUGAUUUGUGACUUUAAAAUUAUAUGUAUUAGUACUAUUUUAUUAA
...........(((((((....((((........(((..((((((......))))))..))).......)))).)))))))......... (-10.61 = -10.61 +   0.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:13 2006