Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 515,525 – 515,615 |
Length | 90 |
Max. P | 0.522363 |
Location | 515,525 – 515,615 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 86.82 |
Mean single sequence MFE | -16.95 |
Consensus MFE | -10.61 |
Energy contribution | -10.61 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.25 |
Mean z-score | -1.89 |
Structure conservation index | 0.63 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522363 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 515525 90 - 23771897 AUUCAAACUGCUGGUGCUUUACAUACUCAUUUGGUUUGGAGUUGCUGAUUUGUUACUUUAAAAUUAUAUGUAUUAGUACUAUUUUAUUAA ...........(((((((.(((((((......).((((((((.((......)).))))))))....))))))..)))))))......... ( -17.30) >DroSec_CAF1 95354 87 - 1 AUUCAAAC---UGGUGCUUAACAUACUCUUUUGGUUUCGAGUUGCUGAUUUGUGACUUUAAAAUUAUAUGUGUUAGUACUAUUUUAUUAA ....(((.---(((((((.((((((......((((((.((((..(......)..))))..))))))..))))))))))))).)))..... ( -18.40) >DroSim_CAF1 97762 87 - 1 AUUCAAGC---UGGUGCUUAACAUACUCUUUUGGUUUCGAGUUGCUGAUUUGUGACUUUAAAAUUAUAUGUGUUAGUACUAUUUUAUUAA ....(((.---(((((((.((((((......((((((.((((..(......)..))))..))))))..))))))))))))).)))..... ( -18.10) >DroYak_CAF1 101283 86 - 1 AUUCAAAC---UGGUGUUUAACAUACUCUUUU-GUUUCCAGUUAUUGAUUUGUGUCUUUAAAAUUUGAUAUACAAGUACUGUAGUAUUAA ..((((((---(((.....((((........)-))).)))))..))))..((((((..........))))))..(((((....))))).. ( -14.00) >consensus AUUCAAAC___UGGUGCUUAACAUACUCUUUUGGUUUCGAGUUGCUGAUUUGUGACUUUAAAAUUAUAUGUAUUAGUACUAUUUUAUUAA ...........(((((((....((((........(((..((((((......))))))..))).......)))).)))))))......... (-10.61 = -10.61 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:13 2006