| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,807,240 – 4,807,360 |
| Length | 120 |
| Max. P | 0.918640 |
| Location | 4,807,240 – 4,807,360 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.17 |
| Mean single sequence MFE | -40.93 |
| Consensus MFE | -25.49 |
| Energy contribution | -25.80 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.62 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.918640 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4807240 120 - 23771897 AGGAACAGAUGCUGCGUCCACUUGUAGUAUUUUGGACUGCAGGUGGACAAUUCAUGGUUCCAGUCAAAGGAGCAACCAAGUCGCUUGAGUUGUUCCUUCAUCUGGGCAAUGUUCUGCUCC .(((.((((...((((((((((((((((.......)))))))))))))...........((((...((((((((((((((...)))).))))))))))...)))))))....)))).))) ( -54.90) >DroVir_CAF1 47686 120 - 1 AGAAACAAGCUCUGCGUCCACCUGUAAUACUGCGGACUGCUCGUGGACAGCUCGUGCGCCCAGUCAAAGGAGCAGCCCAAGCGUUCCAAUUGUUGCUUCAUCUGGGCAAUAUUCUGUUGU ((((....((...(((((((((((((....))))).......)))))).))....))((((((.....((((((((...............))))))))..))))))....))))..... ( -37.67) >DroPse_CAF1 70064 120 - 1 AGAAAGAGGUGCUGGGUCCACCUGUAGUACUGAGGACUGCACGUGGACAGCUCGUGCGUCCAGUCAAAGGAGCAGCCCAGUCGCUGCAGCUGCUGCUUCAUCUGUGCUAUGUUCUGCUGC ((((..(((((.......)))))(((((((.((((((.(((((.(.....).))))))))).......((((((((..(((.......))))))))))).)).))))))).))))..... ( -43.50) >DroGri_CAF1 59269 120 - 1 AGAAACAAACUCUGUGUCCAUUUGUAGUACUCGGGACUACUCGUGGAUAGCUCGUGCGACCAGUCAAAGGAACAUCCGAGUCGCUCCAACUGUUGCUUCAUUUGGCCAAUAUUCUGUUGU ...((((.......((.(((..((.(((((...((((.((((.(((...((....))..)))......((.....)))))).).)))....).)))).))..))).))......)))).. ( -26.02) >DroWil_CAF1 36277 120 - 1 AGAAACAAUUUCUGCGUCCAUUUGUAAUAUUUUGGACUGCAUGUAGAAAGCUCAUGUGACCAGUCAAAGGAGCAUCCCAGACGCUCUAAUUGCUGCUUCAUUUGGGAUAUAUUCUGAUCC ((((....((((((((((((............))))).....)))))))((((...(((....)))...))))((((((((.((..........))....))))))))...))))..... ( -31.20) >DroYak_CAF1 34883 120 - 1 AGAAACAGGUGCUGCGUCCACUUGUAGUACUUUGGACUGCAGGUGGACAGCUCAUGGUUCCAGUCAAAGGAGCAACCCAGCCGCUGAAGUUGUUCCUUCAUCUGGGAAAUAUUCUGUUUU .((((((((((..(((((((((((((((.(....)))))))))))))).)).)))..((((((...((((((((((.(((...)))..))))))))))...))))))......))))))) ( -52.30) >consensus AGAAACAAGUGCUGCGUCCACUUGUAGUACUUUGGACUGCACGUGGACAGCUCAUGCGUCCAGUCAAAGGAGCAACCCAGUCGCUCCAAUUGUUGCUUCAUCUGGGCAAUAUUCUGUUGC ((((...........((((((.((((((.......)))))).)))))).........((((((...(((.(((((..(((...)))...))))).)))...))))))....))))..... (-25.49 = -25.80 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:08 2006