Locus 1658

Sequence ID 3L_DroMel_CAF1
Location 4,806,335 – 4,806,446
Length 111
Max. P 0.967264
window2568

overview

Window 8

Location 4,806,335 – 4,806,446
Length 111
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 78.09
Mean single sequence MFE -34.58
Consensus MFE -19.05
Energy contribution -19.39
Covariance contribution 0.34
Combinations/Pair 1.18
Mean z-score -2.61
Structure conservation index 0.55
SVM decision value 1.61
SVM RNA-class probability 0.967264
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4806335 111 - 23771897
UAUUUAA---UAC----CGAAAACCUUUGUGGGACAUGGGUGACUCCUUGGAGAACCCCGAUACAUCGGUGGAUCCAAUCGUGAACCUGUCCAUUGCGAACUAUGAUGCAUUUGCCAA
.......---...----........(((((.(((((.((.(.((...(((((...((((((....)))).)).)))))..)).).)))))))...))))).......((....))... ( -26.40)
>DroVir_CAF1 46779 115 - 1
UAUUCAA---UAAAGUGCAAAAAUAGUUGAAAACGAUGGGCGAUUCGCUGGAUAACACCGACACAUCGGUGGAUCCGGCCGUAAACCUGUCGAUUGCCAACUAUGAUGCAUUUGCAAA
.......---..(((((((...(((((((..(((((((((......(((((((..((((((....)))))).)))))))......))))))).))..)))))))..)))))))..... ( -43.30)
>DroPse_CAF1 69175 111 - 1
AAUUUUG---UAU----UUAAAACCAUUGGUGGACAUGGGUGAUUCCCUGGAAAACACCGACACAUCGGUGGAUCCCGGCGUGAAUGUGUCAAUAGCCAACUACGAUGCAUUUGCAAA
.......---...----......(((((((((....(.((((.(((....)))..)))).)..)))))))))........(..((((((((..(((....))).))))))))..)... ( -30.50)
>DroMoj_CAF1 67360 115 - 1
UAUCUAA---AAAAGUGCAAAAAUAGUUGCAAAACAUGGGCGAUUCGCUGGACAACACCGAUACAUCGGUGGAUCCAGCCGUUAAUUUGUCCAUAGCCAACUAUGAUGCAUUUGCAAA
.......---..(((((((...(((((((......((((((((..(((((((...((((((....))))))..))))).)).....))))))))...)))))))..)))))))..... ( -40.80)
>DroAna_CAF1 38185 114 - 1
AAUUAAACCGAAC----CAAAAAGCGUUUACGGCCAUGGGUGACUCCCUGGAGAACACCGACACCUCGGUGGAUCCGGGCGUGAAUGUGUCUAUAGCCAAUUACGAUGCAUUUGCAAA
.............----......(((((((((.((..(((.....))).(((...((((((....))))))..))))).)))))))))..................(((....))).. ( -36.00)
>DroPer_CAF1 72844 111 - 1
AAUUUUG---UAU----UUAAAACCAUUGGUGGACAUGGGUGAUUCCCUGGAAAACACCGACACAUCGGUGGAUCCCGGCGUGAAUGUGUCAAUAGCCAACUACGAUGCAUUUGCAAA
.......---...----......(((((((((....(.((((.(((....)))..)))).)..)))))))))........(..((((((((..(((....))).))))))))..)... ( -30.50)
>consensus
AAUUUAA___UAA____CAAAAACCGUUGAAGGACAUGGGUGAUUCCCUGGAAAACACCGACACAUCGGUGGAUCCAGGCGUGAAUGUGUCAAUAGCCAACUACGAUGCAUUUGCAAA
..............................................((((((...((((((....))))))..)))))).((((((.((((.............)))).))))))... (-19.05 = -19.39 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:07 2006