Locus 1656

Sequence ID 3L_DroMel_CAF1
Location 4,793,024 – 4,793,138
Length 114
Max. P 0.944045
window2565

overview

Window 5

Location 4,793,024 – 4,793,138
Length 114
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.80
Mean single sequence MFE -30.70
Consensus MFE -19.80
Energy contribution -19.80
Covariance contribution 0.00
Combinations/Pair 1.21
Mean z-score -1.84
Structure conservation index 0.64
SVM decision value 1.34
SVM RNA-class probability 0.944045
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4793024 114 - 23771897
AACCGA-----U-CAAUCAAUCAACUAAUCGACGAUGUGCAGCGGUCAAGUCAAUCCGCAAGCAACAGCUCGUUGAGGUGCGAACCAUGGCUAAUCCGCCAUCGGUGGUCAAAUUGGCUC
.(((((-----.-...............((((((((((((.((((..........))))..)).)))..)))))))(((....))).((((......)))))))))((((.....)))). ( -33.30)
>DroVir_CAF1 29201 100 - 1
CG-----------CAAUCAAACAACAAA---------CACAGCCGUGAAGUCCAUACGCAAACAGCAGCUCGUUGAGGUGCGAACGAUGGCGAAUCCGCCGUCCGUGGUGAAAUUGGCAC
..-----------...............---------....((((......((((.((((..((((.....))))...))))...(((((((....))))))).))))......)))).. ( -30.70)
>DroPse_CAF1 55490 96 - 1
AACCAA-----U-CAAUCAAUC------------------AGCCGUCAAAUCGAUACGCAAGCAACAGCUCGUUGAAGUGCGAACCAUGGCCAAUCCACCGUCGGUGGUCAAAUUGGCCC
......-----.-.........------------------....(((.....))).((((..((((.....))))...))))......((((((((((((...)))))....))))))). ( -26.00)
>DroMoj_CAF1 53849 109 - 1
CACCAAACCAACCCAAUUGAACCACCAA-----------UAGCUGUGAAGUCUAUACGCAAACAGCAACUCGUUGAGGUGCGAACGAUGGCGAAUCCACCGUCGGUGGUUAAAUUGGCAC
............((((((.(((((((.(-----------(((((....)).)))).((((..((((.....))))...))))...(((((.(....).)))))))))))).))))))... ( -36.30)
>DroAna_CAF1 24777 110 - 1
AACCGA-----C-CAACCAAUC----CAUCGACGAUGUGCAGCGGUCAAGUCGAUACGCAAGCAACAGCUCGUUGAGGUGCGAACCAUGGCUAAUCCACCAUCGGUGGUCAAAUUGGCUC
....((-----(-((.((....----..((((((((((((.((((((.....))).)))..)).)))..)))))))((((.((...........))))))...))))))).......... ( -31.90)
>DroPer_CAF1 59053 96 - 1
AACCAA-----U-CAAUCAAUC------------------AGCCGUCAAAUCGAUACGCAAGCAACAGCUCGUUGAAGUGCGAACCAUGGCCAAUCCACCGUCGGUGGUCAAAUUGGCCC
......-----.-.........------------------....(((.....))).((((..((((.....))))...))))......((((((((((((...)))))....))))))). ( -26.00)
>consensus
AACCAA_____U_CAAUCAAUC____AA___________CAGCCGUCAAGUCGAUACGCAAGCAACAGCUCGUUGAGGUGCGAACCAUGGCCAAUCCACCGUCGGUGGUCAAAUUGGCAC
........................................................((((..((((.....))))...))))......(((((((((((.....))))....))))))). (-19.80 = -19.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:04 2006