Locus 1654

Sequence ID 3L_DroMel_CAF1
Location 4,778,107 – 4,778,203
Length 96
Max. P 0.798201
window2563

overview

Window 3

Location 4,778,107 – 4,778,203
Length 96
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 81.82
Mean single sequence MFE -28.03
Consensus MFE -17.59
Energy contribution -17.42
Covariance contribution -0.16
Combinations/Pair 1.21
Mean z-score -2.42
Structure conservation index 0.63
SVM decision value 0.61
SVM RNA-class probability 0.798201
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4778107 96 - 23771897
UUGGAACUUGUUUACGUGGCGUAUUAGUAUAA-UUUACAACGGAAGCCAUCAAAGG---CUUUGAUGCGCCGCAGGCGAGUCUGGAAAUAAUUUUCCCAU----
..(((.(((((((..((((((((((.(((...-..)))....((((((......))---))))))))))))))))))))))))(((((....)))))...---- ( -35.50)
>DroVir_CAF1 6636 97 - 1
UUGGAACUUGUUUACGUGGCGUAUUAGUAAUAAUUUCGAACGGAAGCCAUCAAAGG---AUCUGAUGCGCCGCAGGCGGCAUUGCAAAUUAUUUUCAUAU----
.(((((...((((..((((((((((((......((((....)))).((......))---..))))))))))))..(((....)))))))...)))))...---- ( -24.90)
>DroPse_CAF1 35886 96 - 1
UUGGAACUUGUUUACGUGGCGUAUUAGUAUAA-UUUACAACGGAAGCCAUCAAAAG---CUUUGAUGCGCCGCAGGCAAGAAGGAGAAUUAUUUUCACAU----
......(((((((..((((((((((.(((...-..)))....(((((........)---)))))))))))))))))))))..(((((....)))))....---- ( -27.60)
>DroWil_CAF1 6242 103 - 1
UUGGAACUUGUUUACGUGGCGUAUUAGUAUAA-UUUACAACGGAAGCCAUCAAAGGGCUUUUUGAUGCGCCGCAGGCGGUAAGCAAAAUUAUUUUCAUCUUUAU
.......((((((((((((((((((((((...-..)))...(((((((.......)))))))))))))))))).....)))))))).................. ( -30.50)
>DroMoj_CAF1 37114 86 - 1
UUGGGACUUGUUUACGUGGCGUAUUAGUAACA-UUUAUAACGAA---------AGG---CUUCGAUGCGCCACAGGCGCCAUUGCAAAUGAUUUUCAU-U----
.((..(.(..(((..(((((((((((((....-(((......))---------).)---))..))))))))))..(((....))))))..).)..)).-.---- ( -22.10)
>DroPer_CAF1 35904 96 - 1
UUGGAACUUGUUUACGUGGCGUAUUAGUAUAA-UUUACAACGGAAGCCAUCAAAAG---CUUUGAUGCGCCGCAGGCAAGAAGGAGAAUUAUUUUCACAU----
......(((((((..((((((((((.(((...-..)))....(((((........)---)))))))))))))))))))))..(((((....)))))....---- ( -27.60)
>consensus
UUGGAACUUGUUUACGUGGCGUAUUAGUAUAA_UUUACAACGGAAGCCAUCAAAGG___CUUUGAUGCGCCGCAGGCGAGAAGGAAAAUUAUUUUCACAU____
.......((((((..((((((((((((.............(....)...............))))))))))))))))))......................... (-17.59 = -17.42 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:02 2006