Locus 1653

Sequence ID 3L_DroMel_CAF1
Location 4,776,692 – 4,776,789
Length 97
Max. P 0.630504
window2562

overview

Window 2

Location 4,776,692 – 4,776,789
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 82.65
Mean single sequence MFE -39.65
Consensus MFE -25.52
Energy contribution -27.24
Covariance contribution 1.72
Combinations/Pair 1.11
Mean z-score -2.08
Structure conservation index 0.64
SVM decision value 0.20
SVM RNA-class probability 0.630504
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4776692 97 - 23771897
UGGGAUUGGGCUAGCUCCGCGCCAGCAUUCCGUUGAUCAUGAUGUUGGCCAGGGCGUUACGCCUCUUUCGCCACGCCCCCAUGCCCUGGGCGUGGUA
..(((..(((((((((((..(((((((((..(.....)..)))))))))..))).)))).))))..)))(((((((((.........))))))))). ( -43.80)
>DroVir_CAF1 4226 89 - 1
--------GGCUAAGUGCGCGUCAGCAUCCCAUUGAUCAUUAUGUUGGCCAGGGCGUUCCGCCUCUUGCGCCACGCCCCCAUGCCCUGGGCAUGAUA
--------((((((((((......))))..(((........))))))))).((((((..(((.....)))..)))))).((((((...))))))... ( -33.60)
>DroPse_CAF1 34198 97 - 1
UGGACUCCUGCUAGCUGCGGGCCAGCAUUCCGUUGAUCAUGAUGUUGGCCAGGGCGUUUCUUCGCUUGCGCCACGCCCCCAUGCCCUGGGCAUGGUA
(((...(((((.....)))))((((((((..(.....)..)))))))))))((((((.....((....))..))))))(((((((...))))))).. ( -37.80)
>DroYak_CAF1 3728 97 - 1
UGGCCAAGGGCUAGCUCCGAGCCAGCAUUCCGUUGAUCAUGAUGUUGGCCAGUGCGUUCCGCCUCUUGCGCCACGCCCCCAUUCCCUGGGCGUGGUA
..((.((((((..((.(.(.(((((((((..(.....)..)))))))))).).)).....))).)))))(((((((((.........))))))))). ( -40.40)
>DroMoj_CAF1 35365 89 - 1
--------GGCUAAGUGCGCGUGAGCAUUCCGUUGAUCAUUAUGUUGGCCAAAGCGUUGCGCCGCUUGCGCCACGCCCCCAUGCCUUGGGCGUGAUA
--------(((((((((.(((..(((.((..((..((......))..))..)))).)..))))))))).)))((((((.........)))))).... ( -33.80)
>DroAna_CAF1 4109 97 - 1
CGGGGAUGGGCUAGCUCCUUGCCAGCAUUCCGUUGAUCAUGAUGUUGGCCAGGGCGUUCCGUCUCUUGCGCCACGCCCCCAUUCCUUGGGCGUGGUA
.(((((((((...((.(((.(((((((((..(.....)..))))))))).)))))..)))))))))...(((((((((.........))))))))). ( -48.50)
>consensus
UGG____GGGCUAGCUCCGCGCCAGCAUUCCGUUGAUCAUGAUGUUGGCCAGGGCGUUCCGCCUCUUGCGCCACGCCCCCAUGCCCUGGGCGUGGUA
........(((((((.......((((.....))))........))))))).((((((..(((.....)))..))))))(((((((...))))))).. (-25.52 = -27.24 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:01 2006