Locus 1651

Sequence ID 3L_DroMel_CAF1
Location 4,772,175 – 4,772,283
Length 108
Max. P 0.994892
window2556

overview

Window 6

Location 4,772,175 – 4,772,283
Length 108
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 95.09
Mean single sequence MFE -23.21
Consensus MFE -20.93
Energy contribution -20.85
Covariance contribution -0.08
Combinations/Pair 1.12
Mean z-score -1.94
Structure conservation index 0.90
SVM decision value 2.52
SVM RNA-class probability 0.994892
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4772175 108 - 23771897
CCGCUCCUCCGCCUGCCGCUUAUCCAAGUCACUUAGGGUAUCAGCAGCUUCUUCCUCUAUAAUCUUCGGAUUGUUACCAUAAUCAAAGCUUUCUUCCCGGGCCAAACC
..........(((((..(((((((((((...))).)))))..)))(((((........((((((....))))))...........))))).......)))))...... ( -23.21)
>DroSec_CAF1 34932 108 - 1
CCGCUCCUCCGCCUGUCGCUUAUCCAAGUCACUUAGGGUAUCAGCAGCUUCUUCCUCUAUAAUCUUCGGAUUGUUACCAUAAUCAAAGCUUUCUUCCCUGGCCAAACC
..........(((.((.((((....)))).))..((((.......(((((........((((((....))))))...........))))).....)))))))...... ( -20.81)
>DroSim_CAF1 33871 108 - 1
CCGCUCCUCCGCCUGUCGCUUAUCCAAGUCACUUAGGGUAUCAGCAGCUUCUUCCUCUAUAAUCUUCGGAUUGUUACCAUAAUCAAAGCUUUCUUCCCGGGCCAAUCC
..........(((((..(((((((((((...))).)))))..)))(((((........((((((....))))))...........))))).......)))))...... ( -23.41)
>DroEre_CAF1 24226 108 - 1
CCGCUCCUCCGCCUGUCGCUUAUCCAAGUCACUUAGGGUAUCGGCUGCUUCCUCCUCUAUAAUCUUCGGAUUGUUACCGUAAUCAAAGCUUUCUUCCCUGGCCAAGCC
..(((.....(((.((.((((....)))).))..((((....((((............((((((....))))))............)))).....)))))))..))). ( -24.15)
>DroYak_CAF1 31428 108 - 1
CCGCUCCUCCGCCUGUCGCUUAUCCAGGUCACUUAGGGUAUCAGCUGCUUCCUCCUCUAUGAUCUUCGGAUUGUUGCCAUAAUCAAAGCUUUCCUCCCGGGCCAAACC
..((((....(((((.........)))))......(((....((((............(..(((....)))..)............)))).....)))))))...... ( -24.45)
>consensus
CCGCUCCUCCGCCUGUCGCUUAUCCAAGUCACUUAGGGUAUCAGCAGCUUCUUCCUCUAUAAUCUUCGGAUUGUUACCAUAAUCAAAGCUUUCUUCCCGGGCCAAACC
..........(((((..(((((((((((...))).)))))..))).((((........((((((....))))))...........))))........)))))...... (-20.93 = -20.85 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:55 2006