Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 509,318 – 509,430 |
Length | 112 |
Max. P | 0.910884 |
Location | 509,318 – 509,430 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.52 |
Mean single sequence MFE | -28.19 |
Consensus MFE | -16.22 |
Energy contribution | -16.69 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.14 |
Mean z-score | -2.71 |
Structure conservation index | 0.58 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910884 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 509318 112 - 23771897 CUUUUCCUGCUUCCCAUGGCCCCAAAAA--CAAAACUUGGCCAGCGUAGAAAAUUGUUUUUCAUAUAAAUUAAUUUCCUUUUGGCGGCCAGCA------GUUAUGGGAAAAAUCCCAGGA ....(((((.((((((((((........--......((((((.((..((.((((((.(((......))).)))))).))....))))))))..------))))))))))......))))) ( -27.59) >DroPse_CAF1 171212 104 - 1 UUUUUCCUGCUUCCCAUGGCCGAAAAA----AAAACC--CCCAAC--------AUGUUUU--CUAUAAAUUAAUUUCCUUUUUGUGAAAAGCAUGAAAAAGCAUGGGAAAAGUCCAAGGA ....((((((((((((((...(.....----......--..)..(--------(((((((--.((((((...........)))))).))))))))......)))))))..)))...)))) ( -21.82) >DroSec_CAF1 89494 112 - 1 CUUUUCCUGCUUCCCAUGGCCCCAAAAA--CAAAACUUGGCCAGCGAAGAAAAUUGUUUUUCAUAUAAAUUAAUUUCCUUUUGGCGGCCAGCA------GCUAUGGGAAAAAUGCCAGGA ....((((((((((((((((........--......((((((.((.((((((((((.(((......))).))))))..)))).))))))))..------))))))))))....).))))) ( -32.99) >DroEre_CAF1 92710 112 - 1 CUUUUCCUGCUUCCCAUGGCCCCAAAAA--CAAAACUUGGCCAGCGUAGAAAAUUGUUUUUCAUAUAAAUUAAUUUCCUUUUGGCGGCCAGCG------GCUAUGGGAAAAAUCCCAGGA ....(((((.(((((((((((.......--......((((((.((..((.((((((.(((......))).)))))).))....)))))))).)------))))))))))......))))) ( -33.54) >DroYak_CAF1 94823 114 - 1 CUUUUCCUGCUUCCCAUGGCCCCAAAAACACAAAACUUGGCCAGCGCAGAAAAUUGUUUUUCAUAUAAAUUAAUUUCCUUUUGGCGGCCAGCA------GCUAUGGGAAAAAUCCCAGGA ....(((((.((((((((((................((((((.((.((((((((((.(((......))).)))))...)))))))))))))..------))))))))))......))))) ( -31.27) >DroPer_CAF1 166963 103 - 1 UUUUUCCUGCUUCCCAUGGCCGAAAA-----AAAACC--CCCAAC--------AUGUUUU--CUAUAAAUUAAUUUCCUUUUUGUGAAAAGCAUGAAAAAGCAUGGGAAAAGUCCAAGGA ....((((((((((((((...(....-----......--..)..(--------(((((((--.((((((...........)))))).))))))))......)))))))..)))...)))) ( -21.90) >consensus CUUUUCCUGCUUCCCAUGGCCCCAAAAA__CAAAACUUGGCCAGCG_AGAAAAUUGUUUUUCAUAUAAAUUAAUUUCCUUUUGGCGGCCAGCA______GCUAUGGGAAAAAUCCCAGGA ....(((((.((((((((((...........(((((...................))))).......................((.....)).......))))))))))......))))) (-16.22 = -16.69 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:12 2006