| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,769,864 – 4,769,983 |
| Length | 119 |
| Max. P | 0.575536 |
| Location | 4,769,864 – 4,769,983 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.37 |
| Mean single sequence MFE | -24.43 |
| Consensus MFE | -22.71 |
| Energy contribution | -22.77 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.09 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575536 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4769864 119 + 23771897 CUUGCCAGUCUUAGAUUUACUUUACAAAAGCAACAUUUUGCCAGUUGCGACACGCCACUCACCAGUGUCACCAUCUAACCGGCUU-GCCAUCUACUCUUUUGCAGGCACAUCAAAUGGAG ....(((...((((((.............(((((.........)))))(((((...........)))))...))))))...((((-((.............))))))........))).. ( -25.32) >DroSec_CAF1 32614 119 + 1 CUUGCCAGUUUUAGAUUUACUUUACAAAAGCAACAUUUUGCCAGUUGCGACACGCCACUCACCAGUGUCACCAUCUAACCGGCUUGGCCAUCUACU-UUUUGCAGGCACAUCAAAUGGAG ..((((....((((((.............(((((.........)))))(((((...........)))))...))))))..(((...))).......-.......))))............ ( -24.70) >DroSim_CAF1 31560 119 + 1 CUUGCCAGUCUAAGAUUUACUUUACAAAAGCAACAUUUUGCCAGUUGCGACACGCCACUCACCAGUGUCACCAUCUAACCGGCUU-GCCAUCUACUCUUUUGCAGGCACAUCAAAUGGAG ..((((.((..((((..............(((((.........)))))(((((...........)))))...........((...-.))......))))..)).))))............ ( -23.60) >DroEre_CAF1 21909 119 + 1 CUUGCCAGUCUUAGAUUUACUUUACAAAAGCAACAUUUUGCCAGUUGCGACACGCCACUCACCAGUGUCACCAUCUAACCGGCUU-GCCAUCUACUCUUUUGCAGGCACAUCAAAUGGAG ....(((...((((((.............(((((.........)))))(((((...........)))))...))))))...((((-((.............))))))........))).. ( -25.32) >DroYak_CAF1 29105 119 + 1 CUUGCCAGUCUUAGGUUUACUUUACAAAAGCAACAUUUUGCCAGUUGCGACACGCCACUCACCAGUGUCACCAUCUAACCGGCUU-GCCAUCUACUCUUUUGCAGGCACAUCAAAUGGAG ....(((......((((............(((((.........)))))(((((...........))))).......)))).((((-((.............))))))........))).. ( -25.62) >DroAna_CAF1 22803 116 + 1 CUUGC---UCUUAGAUUUACUUUACAAAAGCAACAUUUUGCCAGUUGCGACACGCCACUCACCAGUGUUACCAUCUAACCGGCUU-GCCAUCUACUCUUUUGCAGGCACAUCACCAGGAU ((((.---..((((((.............(((((.........)))))(((((...........)))))...))))))...((((-((.............)))))).......)))).. ( -22.02) >consensus CUUGCCAGUCUUAGAUUUACUUUACAAAAGCAACAUUUUGCCAGUUGCGACACGCCACUCACCAGUGUCACCAUCUAACCGGCUU_GCCAUCUACUCUUUUGCAGGCACAUCAAAUGGAG ..((((....((((((.............(((((.........)))))(((((...........)))))...))))))..(((...)))...............))))............ (-22.71 = -22.77 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:48 2006