Locus 1645

Sequence ID 3L_DroMel_CAF1
Location 4,767,099 – 4,767,203
Length 104
Max. P 0.679518
window2546

overview

Window 6

Location 4,767,099 – 4,767,203
Length 104
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 79.37
Mean single sequence MFE -31.87
Consensus MFE -12.10
Energy contribution -12.78
Covariance contribution 0.68
Combinations/Pair 1.19
Mean z-score -2.12
Structure conservation index 0.38
SVM decision value 0.30
SVM RNA-class probability 0.679518
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4767099 104 + 23771897
-----GGGAAUGGUGAAGGGCAGGGGUAUGGAGUUG-------GGGAAAGCGUGCAGAGCAAUAAAAUUAAGCUCGGAUUUAUUGACCCAUUUCAGUUUGACUUGCUGCCAUUUCC
-----(((((((((....((((((....((((((.(-------((..((.......((((...........)))).......))..)))))))))......))))))))))))))) ( -34.74)
>DroSec_CAF1 29900 104 + 1
-----GGGAAGGGUGAAGGGCAGGGGGGUGGAGAUG-------GGGAAAGCGUGCAGAGCAAUAAAAUUAAGCUCGGAUUUAUUGACCCAUUUCAGUUUGACUUGCUGCCAUUUCC
-----(((((.(((....((((((..((..((((((-------((..((.......((((...........)))).......))..))))))))...))..))))))))).))))) ( -34.54)
>DroSim_CAF1 28846 104 + 1
-----GGGAAGGGUGAAGGGCAGGGGGUUGGAGAUG-------GGGAAAGCGUGCAGAGCAAUAAAAUUAAGCUCGGAUUUAUUGACCCAUUUCAGUUUGACUUGCUGCCAUUUCC
-----.(((((.......(((((.(((((.((((((-------((..((.......((((...........)))).......))..)))))))).....))))).))))).))))) ( -35.14)
>DroYak_CAF1 26244 89 + 1
GCAGG-------GGGGG-------------GCGGUG-------GGGAAAGCGUGCAAAGCAAUAAAAUUAAGCUCGGAUUUAUUGACCCAUUUCAGUUUGACUUGCUGCCAUUUCC
...((-------..(.(-------------((((..-------((..((((.((.(((.(((((((.((......)).))))))).....)))))))))..))..))))).)..)) ( -26.20)
>DroAna_CAF1 20061 103 + 1
-------GAAUGGUGCAGGGGAG-----UGCUGAGGGGGAAGGAGGAGAGCGA-AAGAGCAAUAAAAUUAAGCUCGGAUUUAUUGACCCAUUUCAGUUUGACUUGCUGCCAGUUGC
-------...(((((((((....-----.((((((((((...(((..((((..-.................))))...))).....))).)))))))....))))).))))..... ( -28.71)
>consensus
_____GGGAAGGGUGAAGGGCAGGGG__UGGAGAUG_______GGGAAAGCGUGCAGAGCAAUAAAAUUAAGCUCGGAUUUAUUGACCCAUUUCAGUUUGACUUGCUGCCAUUUCC
.............................(((((((.......((..((((.....((((...........))))((.((....)).))......))))..))......))))))) (-12.10 = -12.78 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:44 2006