| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,766,842 – 4,766,936 |
| Length | 94 |
| Max. P | 0.918851 |
| Location | 4,766,842 – 4,766,936 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.79 |
| Mean single sequence MFE | -36.73 |
| Consensus MFE | -20.42 |
| Energy contribution | -20.53 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.918851 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4766842 94 - 23771897 ACUCCGAGGGAGUCUGGCAAUCUGCCGAGGAAACUCG-----GACU------C------CGAGGGCCCGGAAAAGC-GGGAAA--------AGCUGCAAGAAAGAAAUUAUAGUGGCUGA ..(((...((((((((((.....)))(((....))))-----))))------)------)..)))((((......)-)))...--------(((..(....((....))...)..))).. ( -36.70) >DroSec_CAF1 29659 94 - 1 ACUCCGAGGGAGUCUGGCAAUCUGCCGAGGAAACUCG-----GACU------C------CGAGGGUCCGGAAAAGC-GGGAAA--------AGCUGCAAGAAAGAAAUUAUAGUGGCUGA ..(((...((((((((((.....)))(((....))))-----))))------)------)..)))((((......)-)))...--------(((..(....((....))...)..))).. ( -34.20) >DroSim_CAF1 28605 94 - 1 ACUCCGAGGGAGUCUGGCAAUCUGCCGAGGCAACUCG-----GACU------C------CGAGGGUCCGGAAAAGC-GGGAAA--------AGCUGCAAAAAAGAAAUUAUAGUGGCUGA ..(((...((((((((((.....)))(((....))))-----))))------)------)..)))((((......)-)))...--------(((..(....((....))...)..))).. ( -33.70) >DroEre_CAF1 18847 100 - 1 ACUCCGAGGGAGUCUGGCAAUCUGCCGAGGAAACUCG-----GACUCGGACUC------CGAGGGCCCGGAAAAGC-GGGAAA--------AGCUGCAAGAAAGAAAUUAUAGUGGCUGA .(((.(((.(((((((((.....)))(((....))))-----)))))...)))------.)))..((((......)-)))...--------(((..(....((....))...)..))).. ( -38.50) >DroYak_CAF1 25933 114 - 1 ACUCCGAGGGAGUCUGGCAAUCUGCCGAGGAAACUCG-----GACUCGGACUCGAAAUCGGAGGGUCCGGAAAAGC-GGAAAAGCGGGUGGAGCUGCAAGAAAGAAAUUAUAGUGGCUGA .((((((..((((((((.......(((((....))))-----)..))))))))....))))))..((((......)-)))...........(((..(....((....))...)..))).. ( -41.50) >DroAna_CAF1 19749 110 - 1 UCUUCGAGGGAGUCUGGCAAUCUGCCGGCCACUUUCUGGGCGGCGAAGUACUCGCAA--GGAGGGUCCGGGCCAUCUAGGGAG--------GGCAGCAAGAAAGAAAUUAUAGUGGCUGA (((((.(((..(((((((..(((((((.(((.....))).))))).......(....--)))..).))))))..)))..))))--------).((((....((....))......)))). ( -35.80) >consensus ACUCCGAGGGAGUCUGGCAAUCUGCCGAGGAAACUCG_____GACU______C______CGAGGGUCCGGAAAAGC_GGGAAA________AGCUGCAAGAAAGAAAUUAUAGUGGCUGA ..(((...(((.((((((.....)))(((....))).........................))).))))))....................((((((....((....))...)))))).. (-20.42 = -20.53 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:43 2006