Locus 1642

Sequence ID 3L_DroMel_CAF1
Location 4,765,930 – 4,766,021
Length 91
Max. P 0.521667
window2542

overview

Window 2

Location 4,765,930 – 4,766,021
Length 91
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 81.07
Mean single sequence MFE -19.53
Consensus MFE -11.01
Energy contribution -11.90
Covariance contribution 0.89
Combinations/Pair 1.08
Mean z-score -2.27
Structure conservation index 0.56
SVM decision value -0.02
SVM RNA-class probability 0.521667
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4765930 91 + 23771897
------ACAAAUGCAUCCAAGUUAAGAAAUGUUUAGCUUAUUAUAUGUAUCCACAGAAUUUUCUUAAUUAAAGAAGUCGAUUUUGAUUUUUCCCUAG
------....((((((..((((((((.....)))))))).....))))))...((((((((((((.....)))))...)))))))............ ( -12.10)
>DroSec_CAF1 28735 86 + 1
UCUGGGAUACGUGCAACCAAAUUAAGAAAUGUUU----------CUGUAUCCACAGAAUUUUCUUAAUUA-AGAAGUCGAUUUUGACUUUUCCCUGC
...((((............((((((((((...((----------((((....)))))).)))))))))).-.(((((((....)))))))))))... ( -24.40)
>DroSim_CAF1 27682 86 + 1
UCUGGGAUAUGUGCAACCAAAUUAAGAAAUGUUU----------CUGUAUCCACAGAAUUUUCUUAAUUA-AGAAGUCGAUUUUGAUUUUUCCCUGG
...((((............((((((((((...((----------((((....)))))).)))))))))).-.(((((((....)))))))))))... ( -22.10)
>consensus
UCUGGGAUAAGUGCAACCAAAUUAAGAAAUGUUU__________CUGUAUCCACAGAAUUUUCUUAAUUA_AGAAGUCGAUUUUGAUUUUUCCCUGG
...((((............((((((((((...............((((....))))...))))))))))...(((((((....)))))))))))... (-11.01 = -11.90 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:40 2006