Locus 164

Sequence ID 3L_DroMel_CAF1
Location 508,393 – 508,497
Length 104
Max. P 0.866244
window232

overview

Window 2

Location 508,393 – 508,497
Length 104
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 74.13
Mean single sequence MFE -22.54
Consensus MFE -15.92
Energy contribution -16.16
Covariance contribution 0.24
Combinations/Pair 1.16
Mean z-score -1.47
Structure conservation index 0.71
SVM decision value 0.85
SVM RNA-class probability 0.866244
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 508393 104 - 23771897
UUUCAUUACCAAAGUCAAGCUCCAUGAUAUCGAAGUACCAUGGAUUUAAUGGGUUUGGCUUUGAGUCGUUUGAAACGGAACAGAAAAGA-UUUUUCAACGAGUGC
.........(((((((((((.((((...(((.(.......).)))...)))))))))))))))(.(((((.((((..............-..))))))))).).. ( -25.39)
>DroSec_CAF1 88581 87 - 1
UUUCAUUACCAAAGUCAAGCUCCAUGAUAUCGAAGUACCAUGAUUUUAAUGAACUUGGCUUUGAGUCGUUUGAG-----------------UU-UUUAUGAGUGC
.((((..((((((((((((.((..(((.((((........)))).)))..)).)))))))))).))....))))-----------------..-........... ( -17.00)
>DroSim_CAF1 90015 88 - 1
UUUCAUUACCAAAGUCAAGCUCCAUGAUAUCGAAGUACCAUGAUUUUAAUGGGCUUGGCUUUGAGUCGUUUGAG-----------------UUUUUUAUGAUUGC
.((((..(((((((((((((.((((...((((........))))....))))))))))))))).))....))))-----------------.............. ( -24.70)
>DroEre_CAF1 91714 96 - 1
-------ACCAAAGUCAAGCUC--UCAAAUCGCUGUACUAUGACUUUAAUGGGUUUGGCUUUGAGUCGUUCGAGACGGAACAGAAAAUAGUUUUUUUGUGACUGC
-------..(((((((((((((--........(........)........))))))))))))).(((......)))(..((((((((....))))))))..)... ( -26.39)
>DroYak_CAF1 93844 92 - 1
UUUCAUUACCAAAGUCAAGCUC--GGAUAUCGUUGUACUAUCAUUUUAAUGGGUUUGGCUUUGAGUCGUUCGA-----------AAUUUUGUUUCUUGUGGGUGC
.(((((.(((((((((((((((--(........((......))......)))))))))))))).)).....((-----------(((...)))))..)))))... ( -19.24)
>consensus
UUUCAUUACCAAAGUCAAGCUCCAUGAUAUCGAAGUACCAUGAUUUUAAUGGGUUUGGCUUUGAGUCGUUUGAG__________AA_____UUUUUUAUGAGUGC
.......(((((((((((((((......((((........))))......))))))))))))).))....................................... (-15.92 = -16.16 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:10 2006