Locus 1637

Sequence ID 3L_DroMel_CAF1
Location 4,761,353 – 4,761,465
Length 112
Max. P 0.590062
window2534

overview

Window 4

Location 4,761,353 – 4,761,465
Length 112
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 83.46
Mean single sequence MFE -24.02
Consensus MFE -17.66
Energy contribution -17.48
Covariance contribution -0.19
Combinations/Pair 1.23
Mean z-score -1.55
Structure conservation index 0.74
SVM decision value 0.11
SVM RNA-class probability 0.590062
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4761353 112 + 23771897
GUAUCAUUAAAUGUUUGAUGGCUUGGA----GUUAAUUUCCGAAAAUAGUUGGUUCUUGUGCUUAUAUGAUUCAAAAGUUGUUGA----UGUUGCUUUUAUUUGACUAAAAUAAAGUUAU
(((.((((((...(((((.(((..(((----(..((((.........))))..))))...)))........))))).....))))----)).)))((((((((.....)))))))).... ( -18.60)
>DroSec_CAF1 24076 105 + 1
GUAUCAACAAAUGUUUGAUGGCUUGGA----GUUAAUUUCCGAAAAUAGUUGGGUCUUGUGCUUAUAUGGCUCAAAAGUUGUUAA----UGUUG-------UUGACUAUAGUAAAGUUAU
...(((((((....((((..(((((((----(.....))))........(((((((.(((....))).)))))))))))..))))----..)))-------))))............... ( -25.90)
>DroSim_CAF1 21388 105 + 1
GUAUCAACAAAUGUUUGAUGGCUUGGA----GUUAAUUUCCGAAAAUAGUUGGGUCUUGUGCUUAUAUGACUCAAAAGUUGUUAA----UGUUG-------UUGACUAUAGUAAAGUUAU
...(((((((....((((..(((((((----(.....))))........(((((((.(((....))).)))))))))))..))))----..)))-------))))............... ( -26.50)
>DroYak_CAF1 20248 117 + 1
GUAUCUAUAAAUGUUUGAUGACUUGGAGAUAGUUAAAUUCCGAAAGAGGUUGGGUUUUGUGCUUACUAGACCCAAAAGUUGUUGAUUAAUGUUU---UCAUUUGACUAUAAUAAAGUUAU
.................(((((((....((((((((((...(((((...((((((((.((....)).))))))))..((((.....)))).)))---))))))))))))....))))))) ( -25.10)
>consensus
GUAUCAACAAAUGUUUGAUGGCUUGGA____GUUAAUUUCCGAAAAUAGUUGGGUCUUGUGCUUAUAUGACUCAAAAGUUGUUAA____UGUUG_______UUGACUAUAAUAAAGUUAU
....(((((.....((((..(((((((...........)))........(((((((.(((....))).)))))))))))..))))....)))))........(((((.......))))). (-17.66 = -17.48 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:33 2006