Locus 1636

Sequence ID 3L_DroMel_CAF1
Location 4,760,456 – 4,760,571
Length 115
Max. P 0.877616
window2533

overview

Window 3

Location 4,760,456 – 4,760,571
Length 115
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 90.30
Mean single sequence MFE -20.82
Consensus MFE -19.91
Energy contribution -20.13
Covariance contribution 0.22
Combinations/Pair 1.05
Mean z-score -1.26
Structure conservation index 0.96
SVM decision value 0.90
SVM RNA-class probability 0.877616
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4760456 115 - 23771897
UCGUCGCAUUACGCAUGAGGAAUUUUCGCUUUUUAAAUUCUUUAAGUAAUGCAAAUUAAAUUUAAAUAGCAAAUAGGCAAGAGGCAAACACACA-----GCACAACAAACGAGGAACCAA
((.(((((((((...((((((((((.........)))))))))).)))))))................((......))................-----...........)).))..... ( -21.10)
>DroSec_CAF1 23191 115 - 1
UCGUCGCAUUACGCAUGAGGAAUUUUCGCUUUUUAAAUUCUUUAAGUAAUGCAAAUUAAAUUUAAAUAGCAAAUAGGCAAGAGGCAAACACACA-----GCACAACAAGCGAGGAACCAA
((((((((((((...((((((((((.........)))))))))).)))))))................((......))....))).........-----((.......))))........ ( -21.90)
>DroSim_CAF1 20494 115 - 1
UCGUCGCAUUACGCAUGAGGAAUUUUCGCUUUUUAAAUUCUUUAAGUAAUGCAAAUUAAAUUUAAAUAGCAAAUAGGCAAGAGGCAAACACACA-----GCACAACAAGCGAGGAACCAA
((((((((((((...((((((((((.........)))))))))).)))))))................((......))....))).........-----((.......))))........ ( -21.90)
>DroEre_CAF1 12473 107 - 1
UCGUCGCAUUACGCAUGAGGAAUUUUCGCUUUUUAAAUUCUUGAAGUAAUGCAAAUUAAAUUUAAAUAGCAAAUAGGCAAGAGGCAAACACACA-----GCACAACAA--------CCAA
..((((((((((...(.((((((((.........)))))))).).)))))))................((......))....))).........-----.........--------.... ( -19.00)
>DroYak_CAF1 19330 112 - 1
UCGUCGCAUUACGCAUGAGGAAUUUUCGCUUUUUAAAUUCUUCAAGUAAUGCAAAUUAAAUUUAAAUAGCAAAUAGGCAAGAGGCAAACACACACAGCGGCACAACAA--------CGAA
..((((((((((...((((((((((.........)))))))))).)))))))................((......))....................))).......--------.... ( -23.20)
>DroAna_CAF1 13321 115 - 1
UCGUCGCAUUACGCAUGAGAAAUUUUUGCUUUUUAAAUUCUUUAAGUAAUGCAAAUUAAAUUUAAAUAGCAAAUAGGCAAGAGGCAAACACAAC-----ACGCUGGAGAGGAAAAGCCAA
..(((((((((((((.((....))..)))...((((.....)))))))))))................((......))....))).........-----..(((..........)))... ( -17.80)
>consensus
UCGUCGCAUUACGCAUGAGGAAUUUUCGCUUUUUAAAUUCUUUAAGUAAUGCAAAUUAAAUUUAAAUAGCAAAUAGGCAAGAGGCAAACACACA_____GCACAACAA_CGAGGAACCAA
..((((((((((...((((((((((.........)))))))))).)))))))................((......))....)))................................... (-19.91 = -20.13 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:32 2006