Locus 1630

Sequence ID 3L_DroMel_CAF1
Location 4,755,550 – 4,755,648
Length 98
Max. P 0.715202
window2523

overview

Window 3

Location 4,755,550 – 4,755,648
Length 98
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.82
Mean single sequence MFE -31.03
Consensus MFE -26.26
Energy contribution -26.34
Covariance contribution 0.09
Combinations/Pair 1.10
Mean z-score -1.75
Structure conservation index 0.85
SVM decision value 0.39
SVM RNA-class probability 0.715202
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4755550 98 - 23771897
CCACGCCCACUCUGGCC--UUUACCACCCUCCGGAGUGCGCUGUCAAGUGCACUUGUCGGCGUCAUGGCUAUUUGGGUUUACAAAAUAAAAAAGUAAA-------U--G-----------
(((.(((((((((((..--...........))))))))(((((.((((....)))).)))))....)))....)))((((((...........)))))-------)--.----------- ( -30.02)
>DroSec_CAF1 18275 98 - 1
CCACGCCCACUCCGGCC--UUUUCCACCCUCCGGAGUGCGCUGUCAAGUGCACUUGUCGGCGUCAUGGCUAUUUGGGUUCACAAAAUAAAAAAGUAAA-------U--C-----------
....(((((((((((..--...........))))))))(((((.((((....)))).)))))....)))..((((......)))).............-------.--.----------- ( -30.32)
>DroSim_CAF1 15624 98 - 1
CCACGCCCACUCCGGCC--UUUUCCACCCUCCGGAGUGCGCUGUCAAGUGCACUUGUCGGCGUCAUGGCUAUUUGGGUUCACAAAAUAAAAAAGUAAA-------U--G-----------
....(((((((((((..--...........))))))))(((((.((((....)))).)))))....)))..((((......)))).............-------.--.----------- ( -30.32)
>DroEre_CAF1 7563 100 - 1
CCACGCCCACUCCGGCC--CUUUCCACCCUCCGGAGAGCGCUGUCAAGUGCACUUGUCGGCGUCAUGGCUAUUUGGGUUCACAAAAUAAAAAGAAAAAA-----UU--G-----------
....(((((....((((--((((((.......))))))(((((.((((....)))).)))))....))))...))))).....................-----..--.----------- ( -30.20)
>DroYak_CAF1 13975 107 - 1
CCACGCCCACUCCGGCC--UUUUUCGCCCUCCGGAGAGCGCUGUCAAGUGCACUUGUCGGCGUCAUGGCUAUUUGGGUUCACAAAAUACAAAAAAAAAAAAAAGUCGAG-----------
....(((((((((((..--...........)))))).((((((.((((....)))).))))))..........)))))...............................----------- ( -29.32)
>DroAna_CAF1 8096 110 - 1
CCACGCCCACUCGGGCCCCUUCUCCGCCCUCUGGAGUGCGCUGUCAAGUGCACUUGUCGGCGUCAUGGCUAUUUUGGUUCGCACAAAAAAAAAGUGGA----------GUAAGCUCCUAU
(((((((.((..((((.........))))....(((((((((....))))))))))).)))))...))...(((((.......))))).......(((----------(....))))... ( -36.00)
>consensus
CCACGCCCACUCCGGCC__UUUUCCACCCUCCGGAGUGCGCUGUCAAGUGCACUUGUCGGCGUCAUGGCUAUUUGGGUUCACAAAAUAAAAAAGUAAA_______U__G___________
....(((((((((((...............)))))).((((((.((((....)))).))))))..........))))).......................................... (-26.26 = -26.34 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:22 2006