| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 508,066 – 508,178 |
| Length | 112 |
| Max. P | 0.815618 |
| Location | 508,066 – 508,178 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 91.79 |
| Mean single sequence MFE | -32.58 |
| Consensus MFE | -30.40 |
| Energy contribution | -29.76 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815618 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 508066 112 + 23771897 GGUUGAUGAAUGGACUUGGUUUACUUGAGAACAGGUUGCAGGUUGCCGACGGCAGAGGGGGCAG-AAUGAGAAACCGAUUUCGUUCUGGGUGUUAACAGAGUUCCACAAGAUU ..........(((((((.(((.((((.(((((.((((.((..(((((..(......)..)))))-..))...))))(....)))))).)).)).))).))).))))....... ( -31.00) >DroSec_CAF1 88264 111 + 1 GGUUGAUGAAUGGGCUUGGUUCGCUUGGGAACAGGUUACAGGUUGCCAUCGACAGAGG-GGCAG-AAGGAGAAACCGAUUUCGUUCUGGGUGUGAACAGAGUUCCACAAAAUU .(((((((....((((((....(((((....)))))..))))))..))))))).....-..(((-((.((((......)))).))))).(((.((((...)))))))...... ( -33.80) >DroSim_CAF1 89696 112 + 1 GGUUGAUGAAUGGACUUGGUUCACUUGGGAACAGGUUGCAGGUUGCCAUCGACAGAGGGGGCAG-AAGGAGAAACCGAUUUCGUUCUGGGUGUGAACAGAGUUCCACAAAAUU ..........(((((((.((((((((.(((((.((((.(...(((((.((....))...)))))-...)...))))(....)))))).)).)))))).))).))))....... ( -35.10) >DroEre_CAF1 91327 110 + 1 GGUUGAUGAAUGGACUUGGUUUACUUGAGAACUGGUUGCAGGUUGCCAUUGGCAGAGG-GGCAG-AAGG-AAAACCGAUUUCGUUCUGGGUGUGAACAGAGUUCCACAAAAUU ..........(((((((.((((((((.(((((...((((...(((((...)))))...-.))))-..((-....))......))))).)).)))))).))).))))....... ( -29.90) >DroYak_CAF1 93473 111 + 1 GGUUGAUGAAUGGACUUGGUUUACUUGGGAACAGGUUGCAGGCUGCCAUCGGCAGAGG-GGCAGGAAGG-AAAACCGAUUUCGUUCUGGGUGUGAACAGAGUUCCAAGAAAUU ..........(((((((.((((((((.(((((.((((.....(((((.((....))..-))))).....-..))))(....)))))).)).)))))).))).))))....... ( -33.10) >consensus GGUUGAUGAAUGGACUUGGUUUACUUGGGAACAGGUUGCAGGUUGCCAUCGGCAGAGG_GGCAG_AAGGAGAAACCGAUUUCGUUCUGGGUGUGAACAGAGUUCCACAAAAUU ..........(((((((.((((((((.(((((.((((.(...(((((.((......)).)))))....)...))))(....)))))).)).)))))).))).))))....... (-30.40 = -29.76 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:10 2006