Locus 1628

Sequence ID 3L_DroMel_CAF1
Location 4,753,762 – 4,753,881
Length 119
Max. P 0.942014
window2520

overview

Window 0

Location 4,753,762 – 4,753,881
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.85
Mean single sequence MFE -24.58
Consensus MFE -20.22
Energy contribution -22.02
Covariance contribution 1.80
Combinations/Pair 1.08
Mean z-score -1.88
Structure conservation index 0.82
SVM decision value 1.32
SVM RNA-class probability 0.942014
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4753762 119 + 23771897
CAAUCAAAAGUUGAAAUUAGCGCAUUACGGCUGUCAAUCGAUUGAUAACCAUAAGUGUGUAAUUUUCCAGCUGUCAUUUAACAAGACGGCAAAUACAUAAUUUGUCGUACAAUUUAUAU-
........((((((((...(((((((..((.((((((....)))))).))...)))))))...))).))))).............(((((((((.....)))))))))...........- ( -26.80)
>DroSec_CAF1 17188 119 + 1
CAAUCAAAAGUUGAAAUUAGCGCAUUACGUCUGUCAAUCGAUUGAUAACCAUAAAUGUGUAAUUUUCCAGCUGUCAUUGAACAGGACGCCAAAUACAUAAUUUGUCGUACAAUUUAUAU-
...((((.((((((((...(((((((..(..((((((....))))))..)...)))))))...))).)))))....))))...(.(((.(((((.....))))).))).).........- ( -21.60)
>DroSim_CAF1 14573 119 + 1
CAAUCAAAAGUUGAAAUUAGCGCAUUACGGCUGUCAAUCGAUUGAUAACCAUAAAUGUGUAAUUUUCCAGCUGUCAUUGAACUAGACGGCAAAUACAUAAUUUGUCGUACAAUUUAUAU-
...((((.((((((((...(((((((..((.((((((....)))))).))...)))))))...))).)))))....)))).....(((((((((.....)))))))))...........- ( -28.70)
>DroEre_CAF1 6457 114 + 1
CAAUCAAAAGUUCAAAUUAGCGCAUUACGGCUGUCAAUCGAUUGAUAACCAUAAAUGUGUAAUUUUCCAGCUGCCAUUGAACCAGACAGUAA----AUAAUUUGUCGUACAAUUUUUA--
...((((.((((.((((((.((((((..((.((((((....)))))).))...))))))))))))...))))....))))....(((((...----.....)))))............-- ( -21.40)
>DroYak_CAF1 12863 116 + 1
CAAUCAAAAGUUGAAAUUAGCGCAUUACGGCUGUCAAUCGAUUGAUAACCAUAAAUGUGUAAUUUUCCAGCUGUCAUUGAGCAAGACGAACA----AUAAUUUGUCGUAUAAUUUAUAUA
...((((.((((((((...(((((((..((.((((((....)))))).))...)))))))...))).)))))....))))....((((((..----....)))))).............. ( -24.40)
>consensus
CAAUCAAAAGUUGAAAUUAGCGCAUUACGGCUGUCAAUCGAUUGAUAACCAUAAAUGUGUAAUUUUCCAGCUGUCAUUGAACAAGACGGCAAAUACAUAAUUUGUCGUACAAUUUAUAU_
...((((.(((((((((((.((((((..((.((((((....)))))).))...))))))))))))..)))))....)))).....(((((((((.....)))))))))............ (-20.22 = -22.02 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:19 2006