Locus 1623

Sequence ID 3L_DroMel_CAF1
Location 4,751,100 – 4,751,220
Length 120
Max. P 0.993593
window2508

overview

Window 8

Location 4,751,100 – 4,751,220
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 97.05
Mean single sequence MFE -30.63
Consensus MFE -27.84
Energy contribution -28.70
Covariance contribution 0.86
Combinations/Pair 1.03
Mean z-score -2.07
Structure conservation index 0.91
SVM decision value 2.41
SVM RNA-class probability 0.993593
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4751100 120 + 23771897
AUUGUUACAUUUUGCAUUUUAUAUUGCCAAGCUCAGCGGAAGUUGAGCCUCAUGUCUUCAUGUACUUUGCAUAUUUACACUAAUAGAAAUUGUGGCAGGCAAUUGAAAAAAGUUGCUGCU
..(((((((.((((((..............(((((((....)))))))..((((....)))).....))).((((......)))).))).)))))))(((((((......)))))))... ( -32.30)
>DroSec_CAF1 11206 120 + 1
AUUGUUACAUUUUGCAUUUUAUAUUGCCAAGCUCAGAGGAAGUUGAGCCUCAUGUCUUCAUGUACUUUGCAUAUUUACACUAAUAGAAAUUGUGGCAGGCAAUUGAAAAAAGUUGCUGCU
..(((((((.(((...........(((.(((..(((((((...((.....))..))))).))..))).)))((((......)))).))).)))))))(((((((......)))))))... ( -25.90)
>DroSim_CAF1 11842 120 + 1
AUUGUUACAUUUUGCAUUUUAUAUUGCCAAGCUCAGCGGAAGUUGAGCCUCAUGUCUUCAUGUACUUUGCAUAUUUACACUAAUAGAAAUUGUGGCAGGCAAUUGAAAAAAGUUGCUGCU
..(((((((.((((((..............(((((((....)))))))..((((....)))).....))).((((......)))).))).)))))))(((((((......)))))))... ( -32.30)
>DroEre_CAF1 3755 119 + 1
AUUGUUACAUUUUGCAUUUUAUAUUGCCAAGCUCAGCGGAAGUUGAGCCUCAUGUCUUCAUGUACUUUGCAUAUUUACACUAAUAGAAAUUGUGGCAGGCAAUUGAA-AAAGUUGCUGCU
..(((((((.((((((..............(((((((....)))))))..((((....)))).....))).((((......)))).))).)))))))(((((((...-..)))))))... ( -32.10)
>DroYak_CAF1 10185 119 + 1
AUUGUUACAUUUUGCAUUUUAUAUUGCCAAGCUCAGCGGAAGUUGAGCCUCAUGUCUUCAUGUACUUUGCAUAUUUACACUAAUAGAAAUUGCGGCAGGCAAUUGAA-AAAGUUGCUGCU
.............((.........((((..(((((((....)))))))..((((....))))......(((..((((......))))...)))))))(((((((...-..))))))))). ( -32.50)
>DroAna_CAF1 3975 119 + 1
AUUGUUACAUUUUGCAUUUUAUAUUGCCAUGCUCAGCGGAAGUUGAGCCUCAUGUCUUCAUGUACUUUGCAUAUUUACACUAAUAGAAAUUGUGGCAGGCAAUUGAAAAA-GAGGGCGCC
..(((........))).........(((..(((((((....)))))))(((.(((((.(((((.....)))).....(((...........)))).))))).((....))-))))))... ( -28.70)
>consensus
AUUGUUACAUUUUGCAUUUUAUAUUGCCAAGCUCAGCGGAAGUUGAGCCUCAUGUCUUCAUGUACUUUGCAUAUUUACACUAAUAGAAAUUGUGGCAGGCAAUUGAAAAAAGUUGCUGCU
..(((((((.((((((..............(((((((....)))))))..((((....)))).....))).((((......)))).))).)))))))(((((((......)))))))... (-27.84 = -28.70 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:07 2006