Locus 1621

Sequence ID 3L_DroMel_CAF1
Location 4,747,797 – 4,747,908
Length 111
Max. P 0.601039
window2505

overview

Window 5

Location 4,747,797 – 4,747,908
Length 111
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 86.67
Mean single sequence MFE -42.33
Consensus MFE -32.77
Energy contribution -33.57
Covariance contribution 0.80
Combinations/Pair 1.23
Mean z-score -2.27
Structure conservation index 0.77
SVM decision value 0.14
SVM RNA-class probability 0.601039
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4747797 111 - 23771897
CUCACCAGUGGGUAAAACGCUGACAGGACUCGUAGUGACAUGCGGCGACCC---AUCCGCUGGCAGUGAUAAUUUGGCAGAGGACUC------GCUGCUGUCAAAUAUUUGGGGUCCUGG
.....(((((.......))))).(((((((((((.(((((.(((((((...---.(((.(((.(((.......))).))).))).))------))))))))))..)))...)))))))). ( -46.80)
>DroSec_CAF1 7994 111 - 1
CUCACCAGUGGGUAAAACGCUGACAGGACUCGUAGUGACAUGCGGCGACCC---AUCCGCUGGCAGUGAUAAUUUGGCAGAGGACUC------GCUGCUGUCAAAUAUUUGGGGUCCUGG
.....(((((.......))))).(((((((((((.(((((.(((((((...---.(((.(((.(((.......))).))).))).))------))))))))))..)))...)))))))). ( -46.80)
>DroSim_CAF1 8579 111 - 1
CUCACCAGUGGGUAAAACGCUGACAGGACUCGUAGUGACAUGCGGCGACCC---AUCCGCUGGCAGUGAUAAUUUGGCAGAGGACUC------GCUGCUGUCAAAUAUUUGGUGUCCUGG
.....(((((.......))))).(((((((((...(((((.(((((((...---.(((.(((.(((.......))).))).))).))------))))))))))......))).)))))). ( -45.10)
>DroEre_CAF1 370 111 - 1
CUCACCAGUGGGAAAAACGCUGACGGGACUCGCAGUGACAUGCGACGACCC---AUCCGCUGGCAGUGAUAAUUUGGCAGAGGACUC------GCUGCUGUCAAAUAUUUGGGGUCCUGG
.....(((((.......))))).((((((((.((((((((.(((.(((...---.(((.(((.(((.......))).))).))).))------).)))))))).....))))))))))). ( -40.90)
>DroYak_CAF1 6863 111 - 1
CUCACCAGUGGGAAAAAUGCUGACAGGACUCGCAGUGACAUGCGGCGACCC---AUCCGCUGGCAGUGAUAAUUUGGCAGAGGACUC------GCUGCUGUCAAAUAUUUGGGGUCCUGG
.....(((((.......))))).((((((((.((((((((.(((((((...---.(((.(((.(((.......))).))).))).))------)))))))))).....))))))))))). ( -45.00)
>DroAna_CAF1 814 102 - 1
CUCACCA------------------GAAUUCGCAGUGACAUGCGGCGACCCAGGAUCCGUUGGCAAUAAUAAUUUGGUGGACUUUUCGCUGUUGCUGCUGUCAAAUAUUUGAGGUCCUGG
....(((------------------(..((((.(.(((((.((((((((((((......))))............((((((...)))))))))))))))))))....).))))...)))) ( -29.40)
>consensus
CUCACCAGUGGGUAAAACGCUGACAGGACUCGCAGUGACAUGCGGCGACCC___AUCCGCUGGCAGUGAUAAUUUGGCAGAGGACUC______GCUGCUGUCAAAUAUUUGGGGUCCUGG
.....(((((.......))))).((((((((.((((((((.(((((.........(((.(((.(((.......))).))).))).........)))))))))).....))))))))))). (-32.77 = -33.57 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:04 2006