| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,744,691 – 4,744,786 |
| Length | 95 |
| Max. P | 0.628217 |
| Location | 4,744,691 – 4,744,786 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.38 |
| Mean single sequence MFE | -24.86 |
| Consensus MFE | -18.44 |
| Energy contribution | -18.30 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.628217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4744691 95 + 23771897 GC-----AACAUGAAAGCUGGCAAAGAUUCUGGU-----CCCACUGAUUGUGAAAAGUGGUCACG--AUGAUGACAA-AAAUUCACUGCCGGCGAAAUGGAAACAAAG------------ ..-----.........(((((((..((.....((-----(....(.(((((((.......)))))--)).).)))..-....))..)))))))....((....))...------------ ( -24.50) >DroPse_CAF1 18069 108 + 1 GAGCGCCCGUUCGAGAGCCG----AGAGCCGUGA-----GCCGUUGAUUGUGAAAAGUGGUCACGAGAUGAUGACAACAAAUUCACU---GGCGAAAUGAAAACGAACGAAGGAAGGAGC ..((.((((((((...((..----...))(((..-----((((.(((((((.....((.((((.....)))).)).))))..))).)---)))...)))....))))))......)).)) ( -24.80) >DroSec_CAF1 4919 95 + 1 GC-----AACAUGAAAGCUGGCAAAGAUUCUGGU-----CCCACUGAUUGUGAAAAGUGGUCACG--AUGAUGACAA-AAAUUCACUGCCGGCGAAAUGGAAACAAAG------------ ..-----.........(((((((..((.....((-----(....(.(((((((.......)))))--)).).)))..-....))..)))))))....((....))...------------ ( -24.50) >DroSim_CAF1 4925 95 + 1 GC-----AACAUGAAAGCUGGCAAAGAUUCUGGU-----CCCACUGAUUGUGAAAAGUGGUCACG--AUGAUGACAA-AAAUUCACUGCCGGCGAAAUGGAAACAAAG------------ ..-----.........(((((((..((.....((-----(....(.(((((((.......)))))--)).).)))..-....))..)))))))....((....))...------------ ( -24.50) >DroYak_CAF1 3679 100 + 1 GC-----AACAUGAAAGCUGGCAAAGAUUCUGGUCCAGUCCCACUGAUUGUGAAAAGUGGUCACG--AUGAUGACAA-AAAUUCACUGCCGGCGAAAUGAAAACAAAG------------ ..-----..(((....(((((((..((.....((((((.....)))(((((((.......)))))--))...)))..-....))..)))))))...))).........------------ ( -26.00) >consensus GC_____AACAUGAAAGCUGGCAAAGAUUCUGGU_____CCCACUGAUUGUGAAAAGUGGUCACG__AUGAUGACAA_AAAUUCACUGCCGGCGAAAUGGAAACAAAG____________ ................(((((((..((..............(((.....)))....((.((((.....)))).)).......))..)))))))....((....))............... (-18.44 = -18.30 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:58 2006