Locus 1616

Sequence ID 3L_DroMel_CAF1
Location 4,744,486 – 4,744,577
Length 91
Max. P 0.787185
window2498

overview

Window 8

Location 4,744,486 – 4,744,577
Length 91
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 83.50
Mean single sequence MFE -27.82
Consensus MFE -16.74
Energy contribution -17.30
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -2.31
Structure conservation index 0.60
SVM decision value 0.58
SVM RNA-class probability 0.787185
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4744486 91 + 23771897
A----------------CAGAACAACAAUAAGAAAGUCUGGGCAAGACUUAGUC-CGGUUCCACAGGGGUCUACUAGAUGGCCAAGUCCGAACUGGGCCAA-CCAACAC
.----------------................((((((.....)))))).(((-((((((......((((........))))......)))))))))...-....... ( -25.40)
>DroSec_CAF1 4714 91 + 1
A----------------CAGAACAACAAUAAGAAAGUCUGGCCAAGACUAAGCC-CGGUUCCACAGGAGUCAACUAGAUGGCCAGGUCCGAACUGGGCCAA-CCAACAC
.----------------.................(((((.....)))))..(((-((((((.((..(.((((......)))))..))..)))))))))...-....... ( -25.20)
>DroSim_CAF1 4720 91 + 1
A----------------CAGAACAACAAUAAGAAAGUCUGGCCAAGACUAAGCC-CGGUUCCACAGGCGUCAACUAGAUGGCCAGGUCCGAACUGGGCCAA-CCAACAC
.----------------.................(((((.....)))))..(((-((((((.((.((((((.....))).)))..))..)))))))))...-....... ( -26.40)
>DroYak_CAF1 3431 106 + 1
ACUUGCUGUUGUUGUGGCAGAACAACAAUAAGAAAGUCUGGCCAAGACUAAGCCCCGGUGCCACAGGAGUCUACUAA---CCCAGGUCCGAACUGGGCCAAAACAGCAC
...(((((((..((((((................(((((.....)))))..((....))))))))((.((......)---))).(((((.....)))))..))))))). ( -34.30)
>consensus
A________________CAGAACAACAAUAAGAAAGUCUGGCCAAGACUAAGCC_CGGUUCCACAGGAGUCAACUAGAUGGCCAGGUCCGAACUGGGCCAA_CCAACAC
..................................(((((.....)))))..(((.((((((.((..(.(((........))))..))..)))))))))........... (-16.74 = -17.30 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:57 2006