Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,742,128 – 4,742,219 |
Length | 91 |
Max. P | 0.973303 |
Location | 4,742,128 – 4,742,219 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 85.24 |
Mean single sequence MFE | -47.60 |
Consensus MFE | -35.43 |
Energy contribution | -36.43 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.52 |
Structure conservation index | 0.74 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973303 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4742128 91 + 23771897 ---------------------CAGUAGCAGGAAGCAGCUCCAAAGUUGCACACGUCGCCUUCGGAGAGGACUUAAGGCAGCUGAUGCUGGAGCUCCUGUUCCUGAUGCCGCC ---------------------(((.(((((((....((((((.((((((....(((.((....).)..))).....)))))).....))))))))))))).)))........ ( -33.50) >DroSec_CAF1 2364 106 + 1 GAGCAGGCAUAGGAGCA------GGAGCAGGAAGCAGCUCCAAAGUUGCACACGUCGCCUUCGGAGAGGACUUAAGGCAGCUGAUGCUGGAGCUCCUGUUCCUGAUGCCGCC ..((.((((((((((((------(((((.....((((((....)))))).....(((((((.((......)).)))))(((....))).)))))))))))))).))))))). ( -51.40) >DroSim_CAF1 2373 112 + 1 GAGCAGGCACAGGAGCAGGAGCAGGAGCAGGAAGCAGCUCCAAAGUUGCACACGUCGCCUUCGGAGAGGACUUAAGGCAGCUGAUGCUGGAGCUCCUGUUCCUGAUGCCGCC ..((.(((((((((((((((((.(((((.(....).)))))......(((((.((.(((((.((......)).))))).)))).)))....))))))))))))).)))))). ( -57.90) >consensus GAGCAGGCA_AGGAGCA____CAGGAGCAGGAAGCAGCUCCAAAGUUGCACACGUCGCCUUCGGAGAGGACUUAAGGCAGCUGAUGCUGGAGCUCCUGUUCCUGAUGCCGCC .....................(((((((((((....((((((.....(((((.((.(((((.((......)).))))).)))).))))))))))))))))))))........ (-35.43 = -36.43 + 1.00)
Location | 4,742,128 – 4,742,219 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 85.24 |
Mean single sequence MFE | -43.83 |
Consensus MFE | -31.00 |
Energy contribution | -31.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.04 |
Structure conservation index | 0.71 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.936037 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4742128 91 - 23771897 GGCGGCAUCAGGAACAGGAGCUCCAGCAUCAGCUGCCUUAAGUCCUCUCCGAAGGCGACGUGUGCAACUUUGGAGCUGCUUCCUGCUACUG--------------------- ..(((...(((((..((.(((((((((((..(.((((((..(......)..)))))).)..)))).....))))))).)))))))...)))--------------------- ( -32.20) >DroSec_CAF1 2364 106 - 1 GGCGGCAUCAGGAACAGGAGCUCCAGCAUCAGCUGCCUUAAGUCCUCUCCGAAGGCGACGUGUGCAACUUUGGAGCUGCUUCCUGCUCC------UGCUCCUAUGCCUGCUC ((((((((.((((.(((((((..((((....))))....((((...(((((((((((.....)))..))))))))..))))...)))))------)).))))))))).))). ( -46.50) >DroSim_CAF1 2373 112 - 1 GGCGGCAUCAGGAACAGGAGCUCCAGCAUCAGCUGCCUUAAGUCCUCUCCGAAGGCGACGUGUGCAACUUUGGAGCUGCUUCCUGCUCCUGCUCCUGCUCCUGUGCCUGCUC (((((((.(((((.(((((((....((((..(.((((((..(......)..)))))).)..))))......(((((........))))).))))))).))))))))).))). ( -52.80) >consensus GGCGGCAUCAGGAACAGGAGCUCCAGCAUCAGCUGCCUUAAGUCCUCUCCGAAGGCGACGUGUGCAACUUUGGAGCUGCUUCCUGCUCCUG____UGCUCCU_UGCCUGCUC ........(((((..((.(((((((((((..(.((((((..(......)..)))))).)..)))).....))))))).)))))))........................... (-31.00 = -31.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:56 2006