Locus 1614

Sequence ID 3L_DroMel_CAF1
Location 4,741,766 – 4,741,866
Length 100
Max. P 0.741789
window2495

overview

Window 5

Location 4,741,766 – 4,741,866
Length 100
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 99.33
Mean single sequence MFE -21.77
Consensus MFE -22.03
Energy contribution -22.37
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 1.01
SVM decision value 0.45
SVM RNA-class probability 0.741789
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4741766 100 - 23771897
UAUGCAGCAGACAGUUAAGUAAAUUACGACAGGCAUAAAUUGCAAAGCCGAAAUGGGAACGGCAACUUUCGGGGCAUUAAAGUAAUUUACUAAAAUGUAC
..........(((.((.((((((((((.....(((.....)))....((((((.(....)(....))))))).........)))))))))).)).))).. ( -23.10)
>DroSec_CAF1 1995 100 - 1
UAUGCAGCAGACAGUUAAGUUAAUUACGACAGGCAUAAAUUGCAAAGCCGAAAUGGGAACGGCAACUUUCGGGGCAUUAAAGUAAUUUACUAAAAUGUAC
..........(((.((.(((.((((((.....(((.....)))....((((((.(....)(....))))))).........)))))).))).)).))).. ( -19.10)
>DroSim_CAF1 2004 100 - 1
UAUGCAGCAGACAGUUAAGUAAAUUACGACAGGCAUAAAUUGCAAAGCCGAAAUGGGAACGGCAACUUUCGGGGCAUUAAAGUAAUUUACUAAAAUGUAC
..........(((.((.((((((((((.....(((.....)))....((((((.(....)(....))))))).........)))))))))).)).))).. ( -23.10)
>consensus
UAUGCAGCAGACAGUUAAGUAAAUUACGACAGGCAUAAAUUGCAAAGCCGAAAUGGGAACGGCAACUUUCGGGGCAUUAAAGUAAUUUACUAAAAUGUAC
..........(((.((.((((((((((.....(((.....)))....((((((.(....)(....))))))).........)))))))))).)).))).. (-22.03 = -22.37 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:54 2006