Locus 1612

Sequence ID 3L_DroMel_CAF1
Location 4,739,796 – 4,739,886
Length 90
Max. P 0.964362
window2492

overview

Window 2

Location 4,739,796 – 4,739,886
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 95.56
Mean single sequence MFE -29.43
Consensus MFE -27.37
Energy contribution -27.60
Covariance contribution 0.23
Combinations/Pair 1.06
Mean z-score -2.73
Structure conservation index 0.93
SVM decision value 1.57
SVM RNA-class probability 0.964362
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4739796 90 + 23771897
GGAUGUGGACAGAAGCAACCUUAAUGUGACUAUCAAGUGAGGCCAAUUUGUGGCAGCCACUAAUUGAGUUCUCUGAGCCACAACCUGACA
((.(((((.(((((((..(((((...((.....))..))))).(((((.((((...)))).))))).))).))))..))))).))..... ( -28.50)
>DroSec_CAF1 33 90 + 1
GGAUGUGGACAGAAGCAACCUCAAUGUGUCUAUCAAGUGAGGCCAAUUUGUGGCAGCCACUAAUUGAGUUCUCUGUGCAACAUCUUGACA
(((((((.((((((((..(((((...((.....))..))))).(((((.((((...)))).))))).))).))))).).))))))..... ( -29.60)
>DroSim_CAF1 38 90 + 1
GGAUGUGGACAGAAGCAACCUCAAUGUGACUAUCAAGUGAGGCCAAUUUGUGGCAGCCACUAAUUGAGUUCUCUGUGCAACAUCUUGACA
(((((((.((((((((..(((((...((.....))..))))).(((((.((((...)))).))))).))).))))).).))))))..... ( -30.20)
>consensus
GGAUGUGGACAGAAGCAACCUCAAUGUGACUAUCAAGUGAGGCCAAUUUGUGGCAGCCACUAAUUGAGUUCUCUGUGCAACAUCUUGACA
(((((((.((((((((..(((((...((.....))..))))).(((((.((((...)))).))))).))).))))).).))))))..... (-27.37 = -27.60 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:51 2006