| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,736,246 – 4,736,350 |
| Length | 104 |
| Max. P | 0.833410 |
| Location | 4,736,246 – 4,736,350 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 78.82 |
| Mean single sequence MFE | -26.73 |
| Consensus MFE | -16.97 |
| Energy contribution | -16.95 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.833410 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4736246 104 + 23771897 UAUUCG----CCAGCUGCAUUUUUCGCAUGUGCCCUGCAU-GCGAAUGUUGCAUUUGACUUUGAAUGGCGCUUUAAUUGUCAUUUGAUGUGAUUUAUACCGAAAACCGA ..((((----.(((.((((...(((((((((.....))))-)))))...)))).)))((.(..(((((((.......)))))))..).)).........))))...... ( -30.80) >DroSec_CAF1 110005 104 + 1 CAUUCG----CCAGCUGCAUUUUUCGCAUGUGCCCUGCAU-GCGAAUGUAGCAUUUGACUUUGAAUGGCGCUUUAAUUGUCAUUUGAUGUGAUUUAUUCCGAAAACCGA ..((((----...(((((((...((((((((.....))))-)))))))))))...(.((.(..(((((((.......)))))))..).)).).......))))...... ( -31.90) >DroEre_CAF1 110781 101 + 1 AAUUCG----CCGGCUGCAUUUUUCGCAUGUGCCCUGCAU-UCGAAUGCAGCAUUUGACUUUGAAUAGCGCUUUAAUUGUCAUUUGAUGUGAUUUAUACCAAACAC--- ...(((----(..(((((((...(((.((((.....))))-.))))))))))...((((.(((((......)))))..))))......))))..............--- ( -23.00) >DroYak_CAF1 114692 98 + 1 AAUG-------CAGCUGCAUUUUUCGCAUGUGCCCUGCAU-UCGAAUUUAGCAUUUGACUUUGAAUGGCGCUUUAAUUGUCAUUUGAUGUGAUUUAUACCUAAAAC--- ((((-------(((..((((.........)))).))))))-)....(((((....(.((.(..(((((((.......)))))))..).)).).......)))))..--- ( -20.30) >DroMoj_CAF1 146388 104 + 1 UUGUCGCCAGACAGCUGCAUUUUUCGCAUGCCGCCUGCAU-UUUAAAGUG-C-UUCGCCAUCGAAUGGCACUUUAAUUGCCAUUUGAUUUGAUUUACGUCG--CCUUGA .((((....))))((.(((((((....((((.....))))-...))))))-)-.(((..(((((((((((.......))))))))))).)))........)--)..... ( -27.80) >DroAna_CAF1 108294 105 + 1 UAUUUG----CCAGCUGCACUUUUUGCAUGCGACUUGCAUUUCGAGUGGGGCGUUUGGCUUUGAAUGGCGCUUUAAUUGUCAUUUGAUUUGAUUUACACCCGGUUCUGA .....(----((((((.(((((..((((.......))))....))))).)))...)))).(..(((((((.......)))))))..)...................... ( -26.60) >consensus UAUUCG____CCAGCUGCAUUUUUCGCAUGUGCCCUGCAU_UCGAAUGUAGCAUUUGACUUUGAAUGGCGCUUUAAUUGUCAUUUGAUGUGAUUUAUACCGAAAAC_GA .............(((((((((.....((((.....))))...)))))))))........((((((((((.......))))))))))...................... (-16.97 = -16.95 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:50 2006