| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,735,425 – 4,735,545 |
| Length | 120 |
| Max. P | 0.505241 |
| Location | 4,735,425 – 4,735,545 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.62 |
| Mean single sequence MFE | -31.14 |
| Consensus MFE | -28.49 |
| Energy contribution | -28.38 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.92 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.505241 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4735425 120 - 23771897 UGCGCUGAUGUAGUUAAGAAUUGGCAGCAAAUGCUGCUUAAUUUCAAAAGAAACUUUACGUAUUUGUCAUGCGGCGCACAUUCAUUGCGGUGUUCAUUUGAGCGCUUAUUCAGGCAGAGC (((.((((.(((((...(((..((((((....))))))....)))....(((......(((((.....))))).......))))))))(((((((....)))))))...))))))).... ( -33.02) >DroVir_CAF1 154396 118 - 1 --CGCUGAUGUAGUUAAGAAUUGGCAGCAAAUGCUGCUUAAUUUCAAAAGAAACUUUACGUAUUUGUCAUGCGGCGCACAUUCAUUGCGGUGUUCAUUUGGGCGCACAUUGACCCAGCCC --.((((((((((.........((((((....))))))...((((....))))..))))))....((((((...((((.......))))((((((....)))))).)).)))).)))).. ( -31.40) >DroGri_CAF1 121130 112 - 1 --CGCUGAUGUAGUUAAGAAUUGGCAGCAAAUGCUGCUUAAUUUCAAAAGAAACUUUACGUAUUUGUCAUGCGGCGCACAUUCAUUGCGGUGUUCAUUUGAGCAG--AGG----CAAGCG --.(((..(((.......((((((((((....))))).)))))(((((.(((((....(((((.....))))).((((.......)))))).))).)))))))).--.))----)..... ( -28.80) >DroWil_CAF1 105147 120 - 1 AACGCUGAUGUAGUUAAGAAUUGGCAGCAAAUGCUGCUUAAUUUCAAAAGAAACUUUACGUAUUUGUCAUGCGGCGCACAUUCAUUGCGGUGUUCAUUUGAGCGCUUAUUCAAACAGGCC ...(((((((((((.(((....((((((....))))))...((((....))))))).)).)))..)))).))((((((.......)))(((((((....)))))))...........))) ( -30.20) >DroMoj_CAF1 145363 114 - 1 --CGCUGAUGUAGUUAAGAAUUGGCAGCAAAUGCUGCUUAAUUUCAAAAGAAACUUUACGUAUUUGUCAUGCGGCGCACAUUCAUUGCGGUGUUCAUUUGAGCGCUCAUU----CAAGCC --.(((((((((((.(((....((((((....))))))...((((....))))))).)).)))..)))).))((((((.......)))(((((((....)))))))....----...))) ( -30.40) >DroAna_CAF1 107293 118 - 1 UGCGCUGAUGUAGUUAAGAAUUGGCAGCAAAUGCUGCUUAAUUUCAAAAGAAACUUUACGUAUUUGUCAUGCGGCGCACAUUCAUUGCGGUGUUCAUUUGAGCGCUCAUUCAGGCAGU-- (((.((((.(((((...(((..((((((....))))))....)))....(((......(((((.....))))).......))))))))(((((((....)))))))...)))))))..-- ( -33.02) >consensus __CGCUGAUGUAGUUAAGAAUUGGCAGCAAAUGCUGCUUAAUUUCAAAAGAAACUUUACGUAUUUGUCAUGCGGCGCACAUUCAUUGCGGUGUUCAUUUGAGCGCUCAUUCA__CAGGCC ..((((((((((((.(((....((((((....))))))...((((....))))))).)).)))..)))).))).((((.......))))((((((....))))))............... (-28.49 = -28.38 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:49 2006