| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 500,772 – 500,867 |
| Length | 95 |
| Max. P | 0.711018 |
| Location | 500,772 – 500,867 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 74.10 |
| Mean single sequence MFE | -17.61 |
| Consensus MFE | -10.96 |
| Energy contribution | -11.00 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.711018 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 500772 95 + 23771897 AUGACAAACUCUGCUUUUCUGCUACUGCAGCUCGAAAGUGGAAGCACACGACGAAAGCA----------GUCGAAUAAAAUCAAAAUCUAAGCACACAAUGGAAA .(((.....((..(((((((((....))))...)))))..))......((((.......----------)))).......)))...................... ( -18.40) >DroSec_CAF1 80947 72 + 1 ACGACAAGCUCU--------GCUACUGCAGCUCGAAAGUGGAAGCACACGACGAAAGCA----------GUCGAAUAAAAUCAA-AUCUAA-------------- .((((..(((((--------((....)))).(((...(((......)))..))).))).----------))))...........-......-------------- ( -16.80) >DroSim_CAF1 82398 72 + 1 AUGACAAGCUCU--------GCUACUGCAGCUCGAAAGUGGAAGCACACGACGAAAGCA----------GUCGAAUAAAAUCAA-AUCUAG-------------- .((((..(((((--------((....)))).(((...(((......)))..))).))).----------))))...........-......-------------- ( -14.80) >DroEre_CAF1 83863 94 + 1 AUGACCAACUCU--------GCCACUGCAACUCGAAAGUGGCAACACACGUCGAAAGCAGCCGAGCACAGUCGAAUAAAAUCAA-AUCUGAGCCCACACU--AAG .....(.(((.(--------(((.((((...((((..(((....)))...))))..))))..).))).))).)...........-...............--... ( -19.70) >DroYak_CAF1 85181 94 + 1 AUGACAAACUCU--------GCUACUGCAGCUCGAAAGUGGAAACACACGACGAAAGCAGCCAAACACAGUCGAAUAAAAUCGG-AUCUAAGCUCGAAUU--CAG .(((......((--------((....)))).((((..(((....))).((((.................))))...........-........))))..)--)). ( -18.33) >consensus AUGACAAACUCU________GCUACUGCAGCUCGAAAGUGGAAGCACACGACGAAAGCA__________GUCGAAUAAAAUCAA_AUCUAAGC_C__A_U___A_ .((((...............((....)).(((((...(((......)))..)))..))...........))))................................ (-10.96 = -11.00 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:06 2006