Locus 1607

Sequence ID 3L_DroMel_CAF1
Location 4,728,379 – 4,728,491
Length 112
Max. P 0.991879
window2487

overview

Window 7

Location 4,728,379 – 4,728,491
Length 112
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 73.28
Mean single sequence MFE -22.58
Consensus MFE -14.39
Energy contribution -16.33
Covariance contribution 1.95
Combinations/Pair 1.07
Mean z-score -2.02
Structure conservation index 0.64
SVM decision value 2.29
SVM RNA-class probability 0.991879
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4728379 112 + 23771897
GGAGAUUAACUACACUUGGAAAAU-ACGAGGUGUAGAACAUUGAAUGGGGAUA-----CUACACAAAAUAGAUUUGCUACCUGAAGAACUGAAAAGGUAUAGCUAAUAAGAAAUUCGC
(.(((((..((((((((.(.....-.).))))))))....(((..(((.....-----)))..)))....))))).)(((((............)))))................... ( -18.70)
>DroSec_CAF1 102143 118 + 1
GAAGAUUAACUACACUUGGGAAAAUACGAAGUGUAGAACAUUGAAUGGGGAUACCGAACUACAGGAUUAAGAUUUGCUACCUGAAGAACUGAAAAGUUCUGGCUAAUAAGAAAUUGGC
.........((((((((.(.......).)))))))).........(((.....))).....((((..............)))).((((((....)))))).((((((.....)))))) ( -28.34)
>DroSim_CAF1 104073 84 + 1
GGAGAUUAACUACACUUGGGAAAA-ACGAGGUGUAGAACAU---------------------------------UGCUACCUGAAGAACUGAAAAGUUCUGGAAAAUAAGAAAUUGGC
((((.....((((((((.(.....-.).)))))))).....---------------------------------..)).))...((((((....)))))).................. ( -20.70)
>consensus
GGAGAUUAACUACACUUGGGAAAA_ACGAGGUGUAGAACAUUGAAUGGGGAUA_____CUACA__A___AGAUUUGCUACCUGAAGAACUGAAAAGUUCUGGCUAAUAAGAAAUUGGC
.........((((((((.(.......).))))))))................................................((((((....)))))).................. (-14.39 = -16.33 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:46 2006