| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,722,304 – 4,722,400 |
| Length | 96 |
| Max. P | 0.935416 |
| Location | 4,722,304 – 4,722,400 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 89.74 |
| Mean single sequence MFE | -38.22 |
| Consensus MFE | -34.02 |
| Energy contribution | -35.22 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.935416 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4722304 96 + 23771897 CUGAUGAGGCGCAUGAUAAUGGCCCCUGAUGGGCCGAGUUCUUGUCAAAGUCGUGAACGAGAACGU-------UGUGUACUGCUCCAUACUCGUUGGCAACGG----------- (..((((((((((..((..((((((.....)))))).((((((((((......)).))))))))))-------..)))...))......)))))..)......----------- ( -31.40) >DroSec_CAF1 96050 103 + 1 CUGAUGAGGCGCAUGAUAAUGGCCCCUGAUGGGCCGAGUUCUUGUCAAAGUCGUGAACGAGAACGUGGAGCAUUCUGUACAGCUCCAUACUCGUUGGCAACGG----------- (..(((((...........((((((.....)))))).((((((((((......)).))))))))(((((((..........))))))).)))))..)......----------- ( -38.70) >DroSim_CAF1 97938 103 + 1 CUGAUGAGGCGCAUGAUAAUGGCCCCUGAUGGGCCGAGUUCUUGUCAAAGUCGUGAACGAGAACGUGGAGCGUUCUGUACAGCUCCAUACUCGUUGGCAACGG----------- (..(((((...........((((((.....)))))).((((((((((......)).))))))))(((((((((.....)).))))))).)))))..)......----------- ( -39.70) >DroEre_CAF1 98549 109 + 1 CUGAUGAGGCGCAUGAUAAUGGCCCCUGAUGGGCCGAGUUCUUGUCAAAGUCGUGAACGAGAACGUGGAGCAUUCUGUACUGCUCCCUACUCGUUGGCAACGGCAA-----ACG .....(((((.........((((((.....)))))).((((((((((......)).))))))))))((((((........))))))...)))((((....))))..-----... ( -38.90) >DroYak_CAF1 102165 114 + 1 CUGAUGAGGCGCAUGAUAAUGGCCCCUGAUGGGCCGAGUUCUUGUCAAACUCGUGAACGAGAACGUGGAGCAUGCUGUACGGCUCCAUACUCGUUGGCAACGGCAACGGCAAUG (..(((((...........((((((.....)))))).((((((((((......)).))))))))(((((((.((.....))))))))).)))))..)...((....))...... ( -42.40) >consensus CUGAUGAGGCGCAUGAUAAUGGCCCCUGAUGGGCCGAGUUCUUGUCAAAGUCGUGAACGAGAACGUGGAGCAUUCUGUACAGCUCCAUACUCGUUGGCAACGG___________ (..(((((...........((((((.....)))))).((((((((((......)).))))))))(((((((..........))))))).)))))..)................. (-34.02 = -35.22 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:45 2006