Locus 1605

Sequence ID 3L_DroMel_CAF1
Location 4,713,672 – 4,713,762
Length 90
Max. P 0.533040
window2485

overview

Window 5

Location 4,713,672 – 4,713,762
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 91.89
Mean single sequence MFE -25.38
Consensus MFE -19.22
Energy contribution -20.34
Covariance contribution 1.12
Combinations/Pair 1.07
Mean z-score -1.59
Structure conservation index 0.76
SVM decision value -0.00
SVM RNA-class probability 0.533040
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4713672 90 - 23771897
GGCAAAUUGCCACGGAGUGAGUUCCGAUUCCGUUCGUUGGGCAACUGAAAUGAAGAAAAGGAGAUUUGUCGUUAGUUGGGAUUGUAAAAC
(((((((..(((((((((........)))))))(((((((....))..)))))......))..))))))).................... ( -23.10)
>DroSec_CAF1 87428 90 - 1
GGCAAAUUGCCACGGAGUGAGUUCCGAUUCCGUUCGUUGGGCAACUGAAAUGAAGGAAAGGAGAUUUGUCGUUAGUUGGUAUUGCAAAAC
(((((((..((.(((((....))))).((((.((((((((....))..)))))))))).))..))))))).................... ( -26.80)
>DroSim_CAF1 89334 90 - 1
GGCAAAUUGCCACGGAGUGAGUUCCGAUUCCGUUCGUUGGGCAACUGAAAUGAAGGAAAGGAGAUUUGUAGUUAGUUGGUAUUGCAAAAC
(((.....))).(((((....))))).((((.((((((((....))..))))))))))......((((((((........)))))))).. ( -25.00)
>DroEre_CAF1 89875 90 - 1
GGCGAACUGCCACGGAGUGAGUUCCGAUUCCGUUCGUUGGGCAACUGAAAUGAAGGAAAGGAGAUUUGGCGUCAGUUGGGUUUGUUAAAG
(((.....))).(((((....))))).((((.((((((((....))..))))))))))((.(((((..((....))..))))).)).... ( -26.40)
>DroYak_CAF1 93347 90 - 1
GGCAAAUUGCCAAGGAGUGAGUUCCGAUUCCGUUCGUUGGGCAACUGAAAUGAUGGAAAAGAGAUUUGUUGUUAGCUGGGAUUGUUAACC
(((.....)))....((..(((..(..(((((((..(..(....)..)...)))))))..)..)))..))((((((.......)))))). ( -25.60)
>consensus
GGCAAAUUGCCACGGAGUGAGUUCCGAUUCCGUUCGUUGGGCAACUGAAAUGAAGGAAAGGAGAUUUGUCGUUAGUUGGGAUUGUAAAAC
((((((((.((.(((((....))))).((((.((((((((....))..)))))))))).)).)))))))).................... (-19.22 = -20.34 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:44 2006