Locus 1604

Sequence ID 3L_DroMel_CAF1
Location 4,709,048 – 4,709,158
Length 110
Max. P 0.843183
window2484

overview

Window 4

Location 4,709,048 – 4,709,158
Length 110
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 89.39
Mean single sequence MFE -24.47
Consensus MFE -21.80
Energy contribution -21.18
Covariance contribution -0.62
Combinations/Pair 1.12
Mean z-score -1.69
Structure conservation index 0.89
SVM decision value 0.76
SVM RNA-class probability 0.843183
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4709048 110 - 23771897
-----CC--CCCCGUUGGUAAUUUGCCUUAAAUUGCCCGCAUUUUCCUUUCAAGCCAUUCUAUUUUCAUUCUAAGAUGCCCAGAACCUGUUAAGCACCCAGGGCUAGCUGGA-AUCUU
-----..--....((.(((((((((...))))))))).))................................(((((..((((..((((.........)))).....)))).-))))) ( -21.70)
>DroSec_CAF1 82896 117 - 1
UAUGAACCUGCCCGUUGGUAAUUUGCCUCAAAUUGCCCGCAUUUUCCUUUCCAACCAUUCUAUUUUCACUCUAAGAUGCCCAGAACCUGUUAAGCACUCAGGGCUAGCUGGA-AUCUU
.............((.(((((((((...))))))))).))................................(((((..((((..((((.........)))).....)))).-))))) ( -23.80)
>DroSim_CAF1 84757 112 - 1
-----ACCUGCCCGUUGGUAAUUUGCCUCAAAUUGCCCGCAUUUUCCUUUCCAGCCAUUCUAUUUUCACUCUAAGAUGCCCAGAACCUGUUAAGCACUCAGGGCUAGCUGGA-AUCUU
-----........((.(((((((((...))))))))).))........(((((((......(((((......)))))((((.((..((....))...)).))))..))))))-).... ( -27.60)
>DroEre_CAF1 85210 109 - 1
-----CC----AUGUUGGUAAUUUGCCUUAAAUUACCCGCAUUUUCCUUUCUAGCCAUUCUAUUUUCAUUCUAAGGUGCCCAGAACCUGUUAAGCACCCAGGGCCAGCUGGAAAUCUU
-----..----((((.(((((((((...))))))))).))))(((((...((.(((..................(((((.(((...)))....)))))...))).))..))))).... ( -24.80)
>consensus
_____AC__GCCCGUUGGUAAUUUGCCUCAAAUUGCCCGCAUUUUCCUUUCCAGCCAUUCUAUUUUCACUCUAAGAUGCCCAGAACCUGUUAAGCACCCAGGGCUAGCUGGA_AUCUU
.............((.(((((((((...))))))))).))................................(((((..((((..((((.........)))).....))))..))))) (-21.80 = -21.18 +  -0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:43 2006