Locus 1603

Sequence ID 3L_DroMel_CAF1
Location 4,701,645 – 4,701,755
Length 110
Max. P 0.899742
window2483

overview

Window 3

Location 4,701,645 – 4,701,755
Length 110
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 83.69
Mean single sequence MFE -26.94
Consensus MFE -21.42
Energy contribution -21.10
Covariance contribution -0.32
Combinations/Pair 1.08
Mean z-score -2.02
Structure conservation index 0.80
SVM decision value 1.01
SVM RNA-class probability 0.899742
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4701645 110 - 23771897
CGGGGCAGCAGAGUGCGUGACUGAAUGGUAGACUUGGACAAAGUUAGAGUGAGCCAUAGAAA-AAGACCACUACAAAGUGGAUUGUACACUUAAAAAUAAAUUAA--------GACGAU
((..........(((((.......(((((..((((.(((...))).))))..))))).....-....(((((....)))))..))))).(((((.......))))--------).)).. ( -21.90)
>DroSec_CAF1 75459 118 - 1
CGGUGCAGCAGAGCGCGUGACUGAAUGGCAGACUUGGACAAAGUUAGAGUAAGCCAUAGAAA-AAGACCACUACAAAGUGGAUUGUACACUGAAAAAUAAGUUAAGAAAGGUAGACGAU
((((((......))))(((((...(((((..((((.(((...))).))))..))))).....-....(((((....)))))...)).))).........................)).. ( -26.30)
>DroSim_CAF1 76779 118 - 1
CGGGGCAGCAGAGUGCGUGACUAAAUGGCAGACUUGGACAAAGUUAGAGUGAGCCAUAGAAA-AAGACCACUACAAAGUGGAUUGUACACUGAAAAAUAAGUUAAGAACGAUAGACGAU
........(((.(((((.......(((((..((((.(((...))).))))..))))).....-....(((((....)))))..))))).)))........................... ( -24.80)
>DroEre_CAF1 77797 101 - 1
--GGGCAGCAGAGUGCGUGACUGAAUGGCUGACUUGGACAAAGUUAAAGUGAGCCAUAGAAA-AAGACCACUUCAAAGUGGAUUGUGCACUGGAAGAA----CAUGAA-----------
--(..(..(..((((((..(....((((((.((((.(((...))).)))).)))))).....-....(((((....))))).)..)))))).)..)..----).....----------- ( -31.20)
>DroYak_CAF1 80976 117 - 1
--GGGCAGCUCGGUGCGUGACUGAAUGGCAGACUUGGACAAAGUUAGAGUGAGCCAUAGAAAAAAGACCACUACAAAGUGGAUUGUGCACUGAAAAAAAAAUCAAGAAAGGCAGAAGUU
--.......((((((((..(....(((((..((((.(((...))).))))..)))))..........(((((....))))).)..)))))))).......................... ( -30.50)
>consensus
CGGGGCAGCAGAGUGCGUGACUGAAUGGCAGACUUGGACAAAGUUAGAGUGAGCCAUAGAAA_AAGACCACUACAAAGUGGAUUGUACACUGAAAAAUAAAUUAAGAA_G__AGACGAU
.......((.....))(((((...(((((..((((.(((...))).))))..)))))..........(((((....)))))...)).)))............................. (-21.42 = -21.10 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:42 2006