| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,693,238 – 4,693,347 |
| Length | 109 |
| Max. P | 0.746380 |
| Location | 4,693,238 – 4,693,347 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 75.54 |
| Mean single sequence MFE | -17.95 |
| Consensus MFE | -12.43 |
| Energy contribution | -14.43 |
| Covariance contribution | 2.01 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.746380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4693238 109 + 23771897 UUUGGACGAUUAGUUCAUAAUUAAAUUAGUGUGCUAUGGUUUGGUUCUUAGUUUAUUGACUUUAUUUUAACAUCUGAGCUCUAAAUCGUUAAUUAUUAAUUUGAAUAUC ..(((((.....)))))...(((((((((((....(((((((((..(((((....((((.......))))...)))))..)))))))))....)))))))))))..... ( -24.30) >DroSim_CAF1 68259 109 + 1 UUUAGGCGAUUAGUUCAUAAUUAAAUUAGUGUGUCAUGGUUUGGUUCUUAGUUGAUUGACUAUAUUUUAACAUCUGAGCUCUAAAUCGUUAAUUAUUAAUUUGAACUUC ...........((((((......((((((((....(((((((((..(((((.((.((((.......)))))).)))))..)))))))))....)))))))))))))).. ( -22.10) >DroEre_CAF1 69172 86 + 1 --------------UCAUAAUUCAAUUAGUGUGCUUUCGCUUUGUUCUUAGUUUAUUGACUUCAUUUUAACACCUAGGCUCUAAAUCAUUAAAUAUUAAU--------- --------------...........((((((.......((((((((...((((....)))).......))))...)))).......))))))........--------- ( -7.44) >consensus UUU_G_CGAUUAGUUCAUAAUUAAAUUAGUGUGCUAUGGUUUGGUUCUUAGUUUAUUGACUUUAUUUUAACAUCUGAGCUCUAAAUCGUUAAUUAUUAAUUUGAA__UC ....................(((((((((((....(((((((((..(((((....((((.......))))...)))))..)))))))))....)))))))))))..... (-12.43 = -14.43 + 2.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:38 2006