Locus 160

Sequence ID 3L_DroMel_CAF1
Location 499,722 – 499,817
Length 95
Max. P 0.944851
window227

overview

Window 7

Location 499,722 – 499,817
Length 95
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 68.99
Mean single sequence MFE -23.14
Consensus MFE -14.70
Energy contribution -15.33
Covariance contribution 0.63
Combinations/Pair 1.12
Mean z-score -1.62
Structure conservation index 0.64
SVM decision value 1.35
SVM RNA-class probability 0.944851
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 499722 95 - 23771897
GAAAAAUUUGACUA-------------AAUAAUAGUAUUUAGUAUUAUGAA-ACCAUCUAAUGUAGAGCUUCUAUCGCAUCUGGCAUAUGUCAGAUAGUUUCAGGAGCC
..........((((-------------((((....))))))))........-....((((...))))((((((...(((((((((....))))))).))...)))))). ( -22.00)
>DroSec_CAF1 79930 108 - 1
GAAAAACUUGACUACUGCAAAAUGUUGAAUAAUAGUAUGCAGUGUUAUGAA-ACCAUCUAAUGUUGAGCUUCUAUCGCAUCUGGCAUAUGUCAGAUAGUUUUAGGAGCC
......(.((((.((((((...((((....))))...)))))))))).)..-...............(((((((..(((((((((....))))))).))..))))))). ( -30.50)
>DroSim_CAF1 81364 98 - 1
ACAAGAUUUGACUACUGCUAAAUGUUGAAUAAUA----------UUAUGAA-ACCAUCUUAAAUAGAGCUUCUAUCGCAUCUGGCAUAUGUCAGAUAGUUUUAGGAGCC
.(((.(((((.(....).))))).))).......----------.......-....(((.....)))(((((((..(((((((((....))))))).))..))))))). ( -24.20)
>DroEre_CAF1 82861 89 - 1
--------------------AGUCAUGGGUAAUAGUAUGUAGCAUUUUUCAGACCACCUCAUUUAGGGCUUUUAUCGCAGCUGGCAUGUGUCGGAUACUUUAAGGAGCC
--------------------.(((.((((.(((.((.....))))).)))))))............(((((((.......(((((....)))))........))))))) ( -15.86)
>consensus
GAAAAAUUUGACUA______AAUGUUGAAUAAUAGUAUGUAGUAUUAUGAA_ACCAUCUAAUGUAGAGCUUCUAUCGCAUCUGGCAUAUGUCAGAUAGUUUUAGGAGCC
...................................................................(((((((..(((((((((....))))))).))..))))))). (-14.70 = -15.33 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:06 2006