Locus 16

Sequence ID 3L_DroMel_CAF1
Location 52,930 – 53,029
Length 99
Max. P 0.633094
window20

overview

Window 0

Location 52,930 – 53,029
Length 99
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 82.74
Mean single sequence MFE -28.48
Consensus MFE -19.83
Energy contribution -19.47
Covariance contribution -0.36
Combinations/Pair 1.18
Mean z-score -1.82
Structure conservation index 0.70
SVM decision value 0.20
SVM RNA-class probability 0.633094
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 52930 99 + 23771897
CUCG-UGCGU-UGCUUUCUGGCUACGCACAUAAUAUCGACGCACUUUUUAAAAGUCUCUGGUUCCACCAUUU-------GUAUUUGGUGCGUCA--CUCCUGCCAGCUUA
...(-(((((-.(((....))).))))))........((((((((......((((...((....))..))))-------......)))))))).--.............. ( -29.00)
>DroVir_CAF1 15356 108 + 1
GUUGUCGCUUACGCUUCCUGGCCACGCACAAAAUAUCAACGCACUUUUCAA--GUCCUCGCAUUUCGCAUUUCGUAGUCGUAUUUGGUGCGUUGGCCGCCUUUUAGGUUG
......((....)).....((((((((((.((((((.(..(((((.....)--))....((.....)).....))..).)))))).))))).)))))(((.....))).. ( -26.20)
>DroSec_CAF1 2789 99 + 1
CUCGUUGCGU-UGCUUUCUGGCUACGCACAUAAUAUCGACGCACUUUUGAAAAGUCUCUGGGUCU-CCAUUU-------GGAUUUGGUGCGUCA--CUCCUGCCAGCCUA
...((.((((-.(((....))).))))))........((((((((......((((((.(((....-)))...-------)))))))))))))).--.............. ( -27.80)
>DroSim_CAF1 2700 100 + 1
CUCGUUGCGU-UGCUUUCUGGCUACGCACAUAAUAUCGACGCACUUUUGAAAAGUCUCUGGGUCCCCCAUUU-------GGAUUUGGUGCGUCA--CUCCUGCCAGCUUA
...((.((((-.(((....))).))))))........((((((((......((((((.((((...))))...-------)))))))))))))).--.............. ( -29.80)
>DroEre_CAF1 2787 99 + 1
AACG-UGCGU-UGUUUUCUGGCCACGCACAAAAUAUCGACGCACUUUUGAAAAGUCUCUGGGUCCCCCAUUU-------GUAUUUGGUGCGUCA--UUCCUACCAGCUUG
...(-(((((-.(((....))).))))))........((((((((......(((....((((...)))))))-------......)))))))).--.............. ( -27.80)
>DroYak_CAF1 2775 99 + 1
CUCG-UGCGU-UGCUUUCUGGCCACGCACAAAAUAUCGACGCACUUUUGAAAAGUCUCUGGGUCCCCCAUUU-------GUAUUUGGUGCGUCA--CUCCUGCCAGCUUG
...(-(((((-.(((....))).))))))........((((((((......(((....((((...)))))))-------......)))))))).--.............. ( -30.30)
>consensus
CUCG_UGCGU_UGCUUUCUGGCCACGCACAAAAUAUCGACGCACUUUUGAAAAGUCUCUGGGUCCCCCAUUU_______GUAUUUGGUGCGUCA__CUCCUGCCAGCUUA
......(((...(((....)))..)))..........((((((((.............(((.....)))................))))))))................. (-19.83 = -19.47 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:57 2006