Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,690,468 – 4,690,578 |
Length | 110 |
Max. P | 0.999422 |
Location | 4,690,468 – 4,690,578 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 93.27 |
Mean single sequence MFE | -45.63 |
Consensus MFE | -42.80 |
Energy contribution | -42.69 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.17 |
Mean z-score | -2.40 |
Structure conservation index | 0.94 |
SVM decision value | 3.59 |
SVM RNA-class probability | 0.999422 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4690468 110 - 23771897 CGCUAGCACCAAGUUGCAGCUGACAAACGAGCUCAUCCAGCUGCAGCAGCGUCGCCAAUGGGAGUCGGCCUUUGAACUCGAGUUCGACGCGGAGGCCAGUUCCCAGCAGA .(((.((((...((((((((((...............))))))))))...)).))....(((((..((((((((...(((....)))..))))))))..))))))))... ( -47.26) >DroSec_CAF1 64449 110 - 1 CGCUAGCACCAAGUUGCAGCUGACAAACGAGCUCAUCCAGCUGCAGCAGCGUCGCCAAUGGGAGACGGCCUUUGACCUCGAGUUCGACGCGGAGGCCAGUUCCCAGCAGA .(((.((((...((((((((((...............))))))))))...)).))....(((((..((((((((.(.(((....))).)))))))))..))))))))... ( -46.56) >DroSim_CAF1 65514 110 - 1 CGCUAGCACCAAGUUGCAGCUGACAAACGAGCUCAUCCAGCUGCAGCAGCGUCGCCAAUGGGAGACGGCCUUUGACCUCGAGUUCGACGCGGAGGCCAGUUCCCAGCAGA .(((.((((...((((((((((...............))))))))))...)).))....(((((..((((((((.(.(((....))).)))))))))..))))))))... ( -46.56) >DroEre_CAF1 66457 110 - 1 CGCCAGCACCAAGCUGCAGCUGACAAACGAGCUCAUCCAGCUGCAGCAGCGUCGCCAAUGGGAGACGGCCUUUGACCUAGAGUUCGACGCGGAGGCCAGUUCCCAGCAGA .((..((((...((((((((((...............))))))))))...)).))...((((((..((((((((.....(....)....))))))))..))))))))... ( -44.36) >DroYak_CAF1 69533 110 - 1 CGCCAGCACCAAGCUGCAGCUGACAAACGAGCUCAUCCAGCUGCAGCAGCGUCGCCAAUGGGAGACGGCCUUUGACCUCGAGUUCGACGCGGAGGCCAGUUCCCAGCAGA .((..((((...((((((((((...............))))))))))...)).))...((((((..((((((((.(.(((....))).)))))))))..))))))))... ( -48.36) >DroAna_CAF1 64361 110 - 1 UGCCAGCACCAAGCUGCAGUUGACAAACGAGCUCAUCCAGCUGCAGCAGCGCCGGCAGUGGGAGUCGGCCUUUGACCCCAACUUUGAUGCCGAGGCGAGCAUCCAGCAGA .(((.((.(...((((((((((...............)))))))))).).))(((((.((((.((((.....)))))))).......))))).)))..((.....))... ( -40.66) >consensus CGCCAGCACCAAGCUGCAGCUGACAAACGAGCUCAUCCAGCUGCAGCAGCGUCGCCAAUGGGAGACGGCCUUUGACCUCGAGUUCGACGCGGAGGCCAGUUCCCAGCAGA .....((.....((((((((((...............))))))))))...........((((((..((((((((...(((....)))..))))))))..))))))))... (-42.80 = -42.69 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:36 2006