Locus 1598

Sequence ID 3L_DroMel_CAF1
Location 4,685,746 – 4,685,851
Length 105
Max. P 0.991485
window2476

overview

Window 6

Location 4,685,746 – 4,685,851
Length 105
Sequences 3
Columns 106
Reading direction reverse
Mean pairwise identity 67.19
Mean single sequence MFE -18.02
Consensus MFE -9.66
Energy contribution -8.90
Covariance contribution -0.77
Combinations/Pair 1.32
Mean z-score -2.07
Structure conservation index 0.54
SVM decision value 2.27
SVM RNA-class probability 0.991485
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4685746 105 - 23771897
AGUCUUACGCAAUCAUCGAUAUAAUUGAUAUUGCUAUUGACU-UAAACUACUUCUUAUGAUCAACACUCCCCAAUUGCUCGACAUUAAAUACCAAUCCCAUGGGAA
.(((....(((((.((((((...)))))))))))..(((((.-(((........))).).))))................)))............(((....))). ( -14.70)
>DroSec_CAF1 59697 85 - 1
AGUCUUAUGUAAUCAUCGAUAUAAUCGAUAUUGCUAUCGACU-AAUACC--------------------CCCAAUUGCUCGACAUUAAAUACCAAUCCCCUGGGGA
((((....(((((.((((((...)))))))))))....))))-.....(--------------------((((((((...............))))....))))). ( -18.16)
>DroYak_CAF1 64530 106 - 1
AAUAUAACACCAUCGUCGAUAUAAUUGACAUUGCCAGCGGUUCUGGACUACCACUUUGGAUUAAUACUCUCCAAUUACUCGACAUUAAAACCCAAUCACUUGGGAC
..............(((((..((((((......((((.....))))....((.....))............)))))).))))).......(((((....))))).. ( -21.20)
>consensus
AGUCUUACGCAAUCAUCGAUAUAAUUGAUAUUGCUAUCGACU_UAAACUAC__CUU__GAU_AA_ACUCCCCAAUUGCUCGACAUUAAAUACCAAUCCCAUGGGAA
((((....(((((.((((((...)))))))))))....))))...........................((((...........................)))).. ( -9.66 =  -8.90 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:35 2006