Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 4,672,131 – 4,672,223 |
Length | 92 |
Max. P | 0.999560 |
Location | 4,672,131 – 4,672,223 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 99.35 |
Mean single sequence MFE | -17.68 |
Consensus MFE | -16.96 |
Energy contribution | -16.72 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.98 |
Structure conservation index | 0.96 |
SVM decision value | 3.72 |
SVM RNA-class probability | 0.999560 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4672131 92 + 23771897 AAAUGCAACAGCAACAAUAACAAUGGCACAAUGCAAUCAAACAAUCAGAGACAAGCUCGCUGAACUGAAAUGCCAAUUGUGAAAAUUGUAAA ...(((....)))......(((((..(((((((((.(((.....((((.((.....)).))))..)))..)))..))))))...)))))... ( -17.80) >DroSec_CAF1 44118 92 + 1 AAAUGCAACAGCAACAAUAACAAUGGCACAAUGCAAUCAAACAAUCAGAGACAAGCUCGCUGAACUGAAAUGCCAAUUGUGAAAAUUGUAAA ...(((....)))......(((((..(((((((((.(((.....((((.((.....)).))))..)))..)))..))))))...)))))... ( -17.80) >DroSim_CAF1 47128 92 + 1 AAAUGCAACAGCAACAAUAACAAUGGCACAAUGCAAUCAAACAAUCAGAGACAAGCUCGCUGAACUGAAAUGCCAAUUGUGAAAAUUGUAAA ...(((....)))......(((((..(((((((((.(((.....((((.((.....)).))))..)))..)))..))))))...)))))... ( -17.80) >DroEre_CAF1 46789 92 + 1 AAAUGCAACAGCAACAAUAACAAUGGCACAAUGCAAUCAAACAAUCAGAGACAAGCUCGUUGAACUGAAAUGCCAAUUGUGAAAAUUGUAAA ...(((....)))......(((((..(((((((((.(((..((((..(((.....)))))))...)))..)))..))))))...)))))... ( -17.50) >DroYak_CAF1 50639 92 + 1 AAAUGCAACAGCAACAAUAACAAUGGCACAAUGCAAUCAAACAAUCAGAGACAAGCUCGUUGAACUGAAAUGCCAAUUGUGAAAAUUGUAAA ...(((....)))......(((((..(((((((((.(((..((((..(((.....)))))))...)))..)))..))))))...)))))... ( -17.50) >consensus AAAUGCAACAGCAACAAUAACAAUGGCACAAUGCAAUCAAACAAUCAGAGACAAGCUCGCUGAACUGAAAUGCCAAUUGUGAAAAUUGUAAA ...(((....)))......(((((..(((((((((.(((.....((((.((.....)).))))..)))..)))..))))))...)))))... (-16.96 = -16.72 + -0.24)
Location | 4,672,131 – 4,672,223 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 99.35 |
Mean single sequence MFE | -20.90 |
Consensus MFE | -21.14 |
Energy contribution | -20.90 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -2.49 |
Structure conservation index | 1.01 |
SVM decision value | 3.60 |
SVM RNA-class probability | 0.999434 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4672131 92 - 23771897 UUUACAAUUUUCACAAUUGGCAUUUCAGUUCAGCGAGCUUGUCUCUGAUUGUUUGAUUGCAUUGUGCCAUUGUUAUUGUUGCUGUUGCAUUU ...(((((....(((((.(((((..(((((.(((((.(........).))))).)))))....)))))))))).)))))(((....)))... ( -20.90) >DroSec_CAF1 44118 92 - 1 UUUACAAUUUUCACAAUUGGCAUUUCAGUUCAGCGAGCUUGUCUCUGAUUGUUUGAUUGCAUUGUGCCAUUGUUAUUGUUGCUGUUGCAUUU ...(((((....(((((.(((((..(((((.(((((.(........).))))).)))))....)))))))))).)))))(((....)))... ( -20.90) >DroSim_CAF1 47128 92 - 1 UUUACAAUUUUCACAAUUGGCAUUUCAGUUCAGCGAGCUUGUCUCUGAUUGUUUGAUUGCAUUGUGCCAUUGUUAUUGUUGCUGUUGCAUUU ...(((((....(((((.(((((..(((((.(((((.(........).))))).)))))....)))))))))).)))))(((....)))... ( -20.90) >DroEre_CAF1 46789 92 - 1 UUUACAAUUUUCACAAUUGGCAUUUCAGUUCAACGAGCUUGUCUCUGAUUGUUUGAUUGCAUUGUGCCAUUGUUAUUGUUGCUGUUGCAUUU ...(((((....(((((.(((((..(((((.(((((.(........).))))).)))))....)))))))))).)))))(((....)))... ( -20.90) >DroYak_CAF1 50639 92 - 1 UUUACAAUUUUCACAAUUGGCAUUUCAGUUCAACGAGCUUGUCUCUGAUUGUUUGAUUGCAUUGUGCCAUUGUUAUUGUUGCUGUUGCAUUU ...(((((....(((((.(((((..(((((.(((((.(........).))))).)))))....)))))))))).)))))(((....)))... ( -20.90) >consensus UUUACAAUUUUCACAAUUGGCAUUUCAGUUCAGCGAGCUUGUCUCUGAUUGUUUGAUUGCAUUGUGCCAUUGUUAUUGUUGCUGUUGCAUUU ...(((((....(((((.(((((..(((((.(((((.(........).))))).)))))....)))))))))).)))))(((....)))... (-21.14 = -20.90 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:32 2006