| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 4,670,052 – 4,670,172 |
| Length | 120 |
| Max. P | 0.566189 |
| Location | 4,670,052 – 4,670,172 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.17 |
| Mean single sequence MFE | -38.05 |
| Consensus MFE | -23.33 |
| Energy contribution | -24.50 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.566189 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 4670052 120 + 23771897 UUUUCAGCACCUUUUUCAGUACAUCGAUGGUACCACUGUAUUCCGGCUUGCCAUCGAUCACCUUCAUCUGCUGUAUGCGUGUUUUGGCCAUGUCCAGUGGCAUUGAGGUCACGGAGGUCA ......................((((((((((...(((.....)))..)))))))))).((((((....((.....))(((((((.(((((.....)))))...)))).))))))))).. ( -33.80) >DroSec_CAF1 42010 120 + 1 UCUUCACCACCCUUUUCAGUACAUCGAUGGUGCCACUGUAUUCCGGCUUGCCAUCGAUCACCUUCAUCUGCUGGAUGCGUGUUUUGGCCAUGUCCAGUGGCAUUGAGGUCACGGAGGUCA .....(((.((...........((((((((((((..........)))..))))))))).(((((.(((..((((((..(.((....)))..))))))..).)).)))))...)).))).. ( -39.10) >DroSim_CAF1 45037 120 + 1 UCUUCACCACCUUUUUCAGUACAUCGAUGGUGCCACUGUAUUCCGGCUUGCCAUCGAUUACCUUCAUCUGCUGGAUGCGUGUUUUGGCCAUGUCCAGUGGCAUUGAGGUCACGGAGGUCA .....(((.((.......(((.((((((((((((..........)))..))))))))))))(((((.(..((((((..(.((....)))..))))))..)...)))))....)).))).. ( -39.80) >DroEre_CAF1 43326 120 + 1 UCCGCAGCACCCUUUUCAGCACAUCGAUGGUGCCACUGUAUUCCGGCUUGCCCUCGACUACUUUCAUCUGCUGGAUGCGUGUUUUGGCCAUGUCCAGCGGCAUUGAGGUCAUGGUGGUCA ...((((((((....((........)).)))))..(((.....)))..)))....(((((((((((.(((((((((..(.((....)))..)))))))))...)))).....))))))). ( -35.10) >DroYak_CAF1 48523 120 + 1 UCUUGACCACUCUUUUCAGCACAUCGAUGGUGCCACUGUAUUCCGGCUUGCCAUCGAUAACUCUCAUCUGCUGGAUGCGUGUUUUGGCCAUGUCCAGCGGCAUUGAGCAAGUGGUGGUCA ...((((((((...........((((((((((((..........)))..))))))))).(((((((.(((((((((..(.((....)))..)))))))))...))))..))))))))))) ( -47.30) >DroAna_CAF1 42583 108 + 1 UUUUGAACACUUUCAAAAGGACGUCCAUUGUUCCCUUGUAUUCA------CCA---G---UCUUUUGGUUCUGGAUUCUGGUUUUGGCCAUAUCCAGCGGCAUGGAGGCGAUAGUGGUCA (((((((....)))))))....(.((((((((.((((......(------(((---(---....))))).((((((..((((....)))).)))))).......)))).)))))))).). ( -33.20) >consensus UCUUCACCACCCUUUUCAGUACAUCGAUGGUGCCACUGUAUUCCGGCUUGCCAUCGAUCACCUUCAUCUGCUGGAUGCGUGUUUUGGCCAUGUCCAGCGGCAUUGAGGUCACGGAGGUCA ........(((............(((((((((((..........)))..))))))))....(((((.(((((((((..(.((....)))..)))))))))...))))).......))).. (-23.33 = -24.50 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:30 2006