Locus 1593

Sequence ID 3L_DroMel_CAF1
Location 4,657,835 – 4,657,925
Length 90
Max. P 0.975000
window2468

overview

Window 8

Location 4,657,835 – 4,657,925
Length 90
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 76.09
Mean single sequence MFE -33.48
Consensus MFE -20.13
Energy contribution -21.32
Covariance contribution 1.18
Combinations/Pair 1.20
Mean z-score -2.25
Structure conservation index 0.60
SVM decision value 1.74
SVM RNA-class probability 0.975000
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 4657835 90 + 23771897
UGUUGGUGUGGCAUUAGACACGGGUCCGUUUACGGAUCGGGUGUUCUGG--GAUCC-------GAGGACGGAUCUUAGCCCGGGUCAACACAGAGAAAA
((((((..(((.....(((((.((((((....))))))..)))))((((--(((((-------(....)))))))))).)))..))))))......... ( -35.00)
>DroSec_CAF1 30109 90 + 1
UGUUGGUGUGGCAUUAGACACGGGUCCGUUUACGGAUCGGGUGUUCUGG--GUUCU-------GGGUACGGGUCUUAUGCCGGGUCAACACGGAAAAAA
((((((..((((((.((((.(.((((((....)))))).)(((..(...--.....-------)..)))..)))).))))))..))))))......... ( -36.30)
>DroSim_CAF1 30718 90 + 1
UGUUGGUGUGGCAUUAGACACGGGUCCGUUUACGGAUCGGGUGUUCUGG--GUUCC-------GGGUACGGGUCUUAGGCCGGGUCAACACGGAGAAAA
((((((..((((....(((((.((((((....))))))..)))))((((--(..((-------(....)))..)))))))))..))))))......... ( -36.20)
>DroEre_CAF1 30348 89 + 1
UGUUGGCGUGGCAUUAGACACGGGUCCGUGUACGGAUCGGGU--UCUGG--GUUAUGGGU------UCCGGGUCUAAAGUCGGGUCAACACGGCGAAAA
(((((((.((((.((((((.(.((((((....)))))).)..--.((((--(........------))))))))))).)))).)))))))......... ( -38.30)
>DroYak_CAF1 34128 95 + 1
UGUUGGUGUGGCAUUAGACACGGGUUCGUGUGCGGAUCGGGU--UCUGG--GUUCCUGGUUUCGGGUCCGGGUCUUAGGCCGGGUCAACACGGAGAAAA
((((((..((((...(((((((....)))...((((((.((.--.(..(--....)..)..)).)))))).))))...))))..))))))......... ( -36.70)
>DroAna_CAF1 30520 83 + 1
UGUUG-UGCGGCAUUAGACUUGGGCCC------GGAUCGUAU--UCUGGGGGUUCU-------GCUCUCGGUUUCUGUCCAAAAUAAACACUUAAAUAA
....(-((.(((...........))).------((((.(...--.(((((((....-------.)))))))...).))))........)))........ ( -18.40)
>consensus
UGUUGGUGUGGCAUUAGACACGGGUCCGUUUACGGAUCGGGU__UCUGG__GUUCC_______GGGUACGGGUCUUAGGCCGGGUCAACACGGAGAAAA
(((((((.((((...((((.(.((((((....)))))).).....(((....................)))))))...)))).)))))))......... (-20.13 = -21.32 +   1.18)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:27 2006